Parental gene:

RPL9, ENSSHAG00000004918

Aliases:None
Description:ribosomal protein L9 [Source:HGNC Symbol;Acc:10369]
Organism:Tasmanian devil (Sarcophilus harrisii)
Coordinates:GL864853.1:128894..133181(+)


>ENSSHAG00000004918
ATGAAGACCATCCTCAGTAACCAGACGGTCGACATCCCGGAGAACGTCGACGTGTCTCTGAAGGGTCGGACAGTCATCGT
GAAGGGCCCCCGGGGAGTGCTCCGCAGGGACTTCAACCACATCAACGTGGAGCTCAGCCTCCTTGGGAAGAAGAAGAAAA
GGCTCCGGGTGGACAAGTGGTGGGGAAATCGCAAAGAACTTGCAACCGTGCGCACAATCTGCAGCCATGTACAAAATATG
ATCAAAGGCGTCACCCTGGGTTTTCGTTACAAGATGAGGTCTGTGTATGCTCACTTCCCCATAAATGTTGTTATTCAAGA
GAATGGCTCACTTGTTGAAATCAGAAATTTCTTGGGTGAGAAATATATCCGAAGAGTACGCATGAGACCAGGTGTTGCTT
GTGCTGTTTCCCAAGCCCAAAAAGATGAGTTGATTCTTGAAGGAAATGATATTGAACTTGTGTCAAACTCAGCTGCCCTG
ATCCAGCAAGCCACCACAGTCAAAAACAAGGATATCAGAAAATTTTTGGATGGTATCTATGTTTCTGAGAAAGGCACAGT
GCAACAAGCTGATGAATAA

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000007317 ortholog_one2one 1 retrogene
Ailuropoda melanoleuca ENSAMEG00000003187 ortholog_one2many 31 retrogenes
Bos taurus ENSBTAG00000014518 ortholog_one2many 3 retrogenes
Canis familiaris ENSCAFG00000016008 ortholog_one2many 28 retrogenes
Callithrix jacchus ENSCJAG00000000723 ortholog_one2many 29 retrogenes
Cavia porcellus ENSCPOG00000004543 ortholog_one2many 15 retrogenes
Danio rerio ENSDARG00000037350 ortholog_one2one 1 retrogene
Dasypus novemcinctus ENSDNOG00000007411 ortholog_one2many 18 retrogenes
Dipodomys ordii ENSDORG00000001088 ortholog_one2one 6 retrogenes
Equus caballus ENSECAG00000016489 ortholog_one2one 7 retrogenes
Erinaceus europaeus ENSEEUG00000004394 ortholog_one2many 39 retrogenes
Felis catus ENSFCAG00000012284 ortholog_one2many 34 retrogenes
Homo sapiens ENSG00000163682 ortholog_one2one 28 retrogenes
Gorilla gorilla ENSGGOG00000022799 ortholog_one2many 26 retrogenes
Gadus morhua ENSGMOG00000001002 ortholog_one2one 1 retrogene
Loxodonta africana ENSLAFG00000012021 ortholog_one2many 38 retrogenes
Macropus eugenii ENSMEUG00000016722 ortholog_one2many 8 retrogenes
Microcebus murinus ENSMICG00000016778 ortholog_one2many 18 retrogenes
Myotis lucifugus ENSMLUG00000004597 ortholog_one2many 34 retrogenes
Macaca mulatta ENSMMUG00000008553 ortholog_one2many 22 retrogenes
Monodelphis domestica ENSMODG00000020553 ortholog_one2one 7 retrogenes
Mus musculus ENSMUSG00000047215 ortholog_one2many 2 retrogenes
Nomascus leucogenys ENSNLEG00000017100 ortholog_one2one 26 retrogenes
Otolemur garnettii ENSOGAG00000004935 ortholog_one2many 20 retrogenes
Procavia capensis ENSPCAG00000005834 ortholog_one2one 22 retrogenes
Pongo abelii ENSPPYG00000014675 ortholog_one2many 10 retrogenes
Pteropus vampyrus ENSPVAG00000000919 ortholog_one2one 49 retrogenes
Rattus norvegicus ENSRNOG00000026716 ortholog_one2many 3 retrogenes
Sus scrofa ENSSSCG00000025192 ortholog_one2one 15 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000002077 ortholog_one2one 13 retrogenes
Tupaia belangeri ENSTBEG00000006042 ortholog_one2many 18 retrogenes
Tursiops truncatus ENSTTRG00000014289 ortholog_one2one 13 retrogenes
Vicugna pacos ENSVPAG00000002023 ortholog_one2many 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_shar_191 69.67 62.50
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2. retro_shar_192 78.07 58.85
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3. retro_shar_236 65.07 74.48
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4. retro_shar_340 69.70 51.04
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5. retro_shar_359 64.46 84.38
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6. retro_shar_406 63.58 88.02
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7. retro_shar_600 71.68 58.33
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8. retro_shar_607 68.93 91.15
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Download FASTA sequences of all ENSSHAG00000004918 retrocopies