RetrogeneDB ID:

retro_nleu_410

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397264.1:5274044..5274613(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL9
Ensembl ID:ENSNLEG00000017100
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_410
ATGAAGACTATTCTCAGCAATGAGACTGTTGGCACTCCGGAAAATGTCAACATTACTCTGAAGGGACACACAGTTATTGT
GAAGGGCCCCAGAGGAACCCTGTGAAGGGACTTCTGTCCTATCAATGTAGAACTCGGTCTCCTTGGAAAGAAAAAGAGGC
TCCAGTTGACAAATGGAGTAACAGAAAAAACCTGGCTACTGTCTATACTCTTTGTAGTCATGCACAGAACATGATCAAGG
GTGTTACAGTGGGCTTCCATTACAAGACGAGGTCTGCGCATGCTCACTTCCCTATCAATGTCGTTATCCAGGAGAATGGG
TCTCTTGTTGACATCCGAAATTTCTTGGGTGAAAAATGAATCCTCAGGGTTCGGATAAGGCCAAATGTTGCTTGTTTGGT
ATCTCAAGCCCAGAACAATGAATTAATCTTGGAAAGAAACAACACTGAGCTTATTTCAAATACAGCTGCTTTGATTCAGC
AAGCCACAACAGTTAAAAACAAAGATACCAGAAAACTTTTGGATGGTATCTATGTGTCTGAAAAAGGAACAGTTCTGCAG
GATGATGAG

ORF - retro_nleu_410 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 79.27 %
Parental protein coverage: 100. %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLR-VDKWWGNRKELAT
MKTILSN.TV..PENV.ITLKG.TVIVKGPRGTL.RDF..INVEL.LLGKKK.RL..VDKW..NRK.LAT
RetrocopyMKTILSNETVGTPENVNITLKGHTVIVKGPRGTL*RDFCPINVELGLLGKKK-RLQ<VDKW-SNRKNLAT
ParentalVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQA
V.T.CSH.QNMIKGVT.GF.YK.RS..AHFPINVVIQENGSLV.IRNFLGEK.I.RVR.RP.VAC.VSQA
RetrocopyVYTLCSHAQNMIKGVTVGFHYKTRSAHAHFPINVVIQENGSLVDIRNFLGEK*ILRVRIRPNVACLVSQA
ParentalQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQADE
Q..ELILE.N..EL.SN.AALIQQATTVKNKD.RK.LDGIYVSEKGTV.Q.DE
RetrocopyQNNELILERNNTELISNTAALIQQATTVKNKDTRKLLDGIYVSEKGTVLQDDE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide