Parental gene: | CHTOP, ENSECAG00000020889 |
| Aliases: | None |
| Description: | chromatin target of PRMT1 [Source:HGNC Symbol;Acc:24511] |
| Organism: | Horse (Equus caballus) |
| Coordinates: | 5:43894287..43902706(-) |
>ENSECAG00000020889
ATGGCTGCACAGTCAGCGCCGAAAGTTGTGCTAAAAAGCACCACCAAGATGTCTCTAAATGAGCGCTTTACTAATATGCT
GAAGAACAAACAGCCGATGCCAGTGAATATTCGAGCTTCGATGCAGCAACAACAGCAGCTAGCCAGTGCCAGAAACAGAA
GACTGGCCCAGCAGATGGAGAATAGACCCTCTGTCCAGGCAGCATTAAAACTTAAGCAGAGCTTAAAGCAGCGCCTGGGT
AAGAGTAACATCCAGGCACGGTTAGGCCGACCCATAGGGGCCCTGGCCAGGGGAGCAATCGGAGGACGAGGCCTGCCCAT
AATCCAGAGAGGCTTGCCCAGAGGAGGACTACGTGGGGGACGTGCCACAAGAACCCTACTTAGGGGCGGGATGTCGCTCC
GAGGTCAAAACCTGCTCCGAGGTGGACGAGCCGTAGCTCCCCGAATGGGCTTAAGAAGAGGTGGTGTTCGAGGTCGTGGA
GGTCCTGGGAGAGGGGGCCTAGGGCGTGGAGCTATGGGTCGTGGCGGAATCGGTGGTAGAGGTCGGGGTATGATAGGTCG
GGGAAGAGGGGGCTTTGGAGGCAGAGGCAGAGGCCGTGGACGAGGGAGAGGTGCCCTTGCTCGCCCCGTACTGACCAAGG
AGCAGCTGGACAACCAGTTGGATGCATACATGTCGAAAACGAAAGGACACCTGGATGCTGAGTTGGATGCCTACATGGCA
CAGACAGATCCTGAAACCAATGATTGA
ATGGCTGCACAGTCAGCGCCGAAAGTTGTGCTAAAAAGCACCACCAAGATGTCTCTAAATGAGCGCTTTACTAATATGCT
GAAGAACAAACAGCCGATGCCAGTGAATATTCGAGCTTCGATGCAGCAACAACAGCAGCTAGCCAGTGCCAGAAACAGAA
GACTGGCCCAGCAGATGGAGAATAGACCCTCTGTCCAGGCAGCATTAAAACTTAAGCAGAGCTTAAAGCAGCGCCTGGGT
AAGAGTAACATCCAGGCACGGTTAGGCCGACCCATAGGGGCCCTGGCCAGGGGAGCAATCGGAGGACGAGGCCTGCCCAT
AATCCAGAGAGGCTTGCCCAGAGGAGGACTACGTGGGGGACGTGCCACAAGAACCCTACTTAGGGGCGGGATGTCGCTCC
GAGGTCAAAACCTGCTCCGAGGTGGACGAGCCGTAGCTCCCCGAATGGGCTTAAGAAGAGGTGGTGTTCGAGGTCGTGGA
GGTCCTGGGAGAGGGGGCCTAGGGCGTGGAGCTATGGGTCGTGGCGGAATCGGTGGTAGAGGTCGGGGTATGATAGGTCG
GGGAAGAGGGGGCTTTGGAGGCAGAGGCAGAGGCCGTGGACGAGGGAGAGGTGCCCTTGCTCGCCCCGTACTGACCAAGG
AGCAGCTGGACAACCAGTTGGATGCATACATGTCGAAAACGAAAGGACACCTGGATGCTGAGTTGGATGCCTACATGGCA
CAGACAGATCCTGAAACCAATGATTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP021940_synovial_membrane | 32 .61 RPM |
| SRP021940_embryo | 53 .55 RPM |
| SRP021940_cerebellum | 48 .30 RPM |
| SRP021940_testis | 92 .40 RPM |
| SRP021940_placental_villous | 33 .82 RPM |
| SRP021940_articular_cartilage | 24 .20 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000013518 | possible_ortholog | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000004834 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000002658 | ortholog_one2one | 3 retrogenes | |
| Myotis lucifugus | ENSMLUG00000016098 | ortholog_one2many | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000012760 | possible_ortholog | 1 retrogene | |
| Vicugna pacos | ENSVPAG00000010259 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ecab_729 | 98.39 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSECAG00000020889 retrocopies