Parental gene:

ENSCJAG00000016002

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:3:84970013..84990830(-)


>ENSCJAG00000016002
ATGGAGACTTTGTACCGTGTCCCGTTCTTAGTACTGGAATGTCCCAACCTGAAGCTGAAGAAGCCGCCCTGGCTGCACAT
GCCGTCGGCCATGACTGTGTATGCTCTGGTGGTGGTGTCTTACTTCCTCATCACCGGAGGAATAATTTATGATGTTATTG
TTGAACCACCAAGTGTTGGCTCTATGACTGATGAACATGGGCATCAGAGGCCAGTAGCTTTCTTGGCCTACAGAGTAAAT
GGACAATATATTATGGAAGGACTTGCATCCAGCTTCCTGTTTACAATGGGAGGTTTAGGTTTCATAATCCTGGACCGATC
GAATGCACCAAATATCCCAAAACTCAATAGATTTCTTCTTCTATTCATTGGATTCGTCTGTGTTCTGTTGAGTTTTTTCA
TGGCTAGAGTATTCATGAGAATGAAACTGCCGGGCTATCTGATGGGTTAG

Library Parental gene expression (RPM)
SRP051959_spleen 15 .97 RPM
SRP051959_skeletal_muscle 5 .11 RPM
SRP051959_lymph_node 13 .61 RPM
SRP051959_lung 10 .12 RPM
SRP051959_liver 28 .46 RPM
SRP051959_kidney 14 .73 RPM
SRP051959_heart 5 .93 RPM
SRP051959_colon 19 .28 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001753 possible_ortholog 2 retrogenes
retro_amel_1110, retro_amel_165,
Bos taurus ENSBTAG00000011611 possible_ortholog 1 retrogene
retro_btau_753,
Canis familiaris ENSCAFG00000011286 possible_ortholog 12 retrogenes
retro_cfam_1129, retro_cfam_1206, retro_cfam_1459, retro_cfam_1462, retro_cfam_1575, retro_cfam_1851, retro_cfam_1910, retro_cfam_1948, retro_cfam_2003, retro_cfam_263, retro_cfam_296, retro_cfam_814,
Cavia porcellus ENSCPOG00000024467 possible_ortholog 1 retrogene
retro_cpor_659,
Dasypus novemcinctus ENSDNOG00000011172 possible_ortholog 2 retrogenes
retro_dnov_12, retro_dnov_1973,
Echinops telfairi ENSETEG00000003717 possible_ortholog 4 retrogenes
retro_etel_1564, retro_etel_492, retro_etel_878, retro_etel_970,
Homo sapiens ENSG00000198856 possible_ortholog 7 retrogenes
retro_hsap_1746, retro_hsap_2013, retro_hsap_2972, retro_hsap_3598, retro_hsap_3686, retro_hsap_376, retro_hsap_4246,
Gorilla gorilla ENSGGOG00000026873 ortholog_many2many 6 retrogenes
retro_ggor_1457, retro_ggor_2060, retro_ggor_215, retro_ggor_2427, retro_ggor_370, retro_ggor_385,
Loxodonta africana ENSLAFG00000026381 possible_ortholog 7 retrogenes
retro_lafr_1046, retro_lafr_17, retro_lafr_222, retro_lafr_231, retro_lafr_444, retro_lafr_549, retro_lafr_618,
Myotis lucifugus ENSMLUG00000000478 possible_ortholog 2 retrogenes
retro_mluc_1366, retro_mluc_1511,
Monodelphis domestica ENSMODG00000020599 possible_ortholog 1 retrogene
retro_mdom_428,
Mustela putorius furo ENSMPUG00000008869 possible_ortholog 1 retrogene
retro_mputfur_1451,
Mus musculus ENSMUSG00000041084 possible_ortholog 1 retrogene
retro_mmus_648,
Nomascus leucogenys ENSNLEG00000012929 ortholog_one2many 11 retrogenes
retro_nleu_1372, retro_nleu_1436, retro_nleu_2026, retro_nleu_2265, retro_nleu_2274, retro_nleu_2665, retro_nleu_2796, retro_nleu_2826, retro_nleu_297, retro_nleu_474, retro_nleu_923,
Oryctolagus cuniculus ENSOCUG00000011056 possible_ortholog 2 retrogenes
retro_ocun_1318, retro_ocun_7,
Otolemur garnettii ENSOGAG00000033684 ortholog_one2many 1 retrogene
retro_ogar_578,
Pan troglodytes ENSPTRG00000024222 possible_ortholog 1 retrogene
retro_ptro_34,
Pteropus vampyrus ENSPVAG00000005915 possible_ortholog 1 retrogene
retro_pvam_924,
Rattus norvegicus ENSRNOG00000023322 possible_ortholog 1 retrogene
retro_rnor_2297,
Sus scrofa ENSSSCG00000009145 possible_ortholog 1 retrogene
retro_sscr_503,
Ictidomys tridecemlineatus ENSSTOG00000021644 possible_ortholog 6 retrogenes
retro_itri_1211, retro_itri_1386, retro_itri_15, retro_itri_1571, retro_itri_789, retro_itri_863,
Tarsius syrichta ENSTSYG00000000724 possible_ortholog 2 retrogenes
retro_tsyr_1193, retro_tsyr_921,
Tursiops truncatus ENSTTRG00000003446 possible_ortholog 1 retrogene
retro_ttru_582,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_121 82.55 100.00
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2. retro_cjac_324 89.77 59.06
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3. retro_cjac_2981 84.62 87.25
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Download FASTA sequences of all ENSCJAG00000016002 retrocopies