RetrogeneDB ID:

retro_etel_970

Retrocopy
location
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:scaffold_193367:4281..4617(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:OSTC
Ensembl ID:ENSETEG00000003717
Aliases:None
Description:oligosaccharyltransferase complex subunit (non-catalytic) [Source:HGNC Symbol;Acc:24448]


Retrocopy-Parental alignment summary:






>retro_etel_970
TTGGAGACCTTGTGCCAAGTCCCTTTCTGAGTGCTGGAATGCCCTCACTGAAGCTGAGAAGCTGCCTGGGTGCACATGTT
GTCGGCCATGACAGCATACGTTCTGGTGGTGTCTTACTTTCTTCTCACCGAAGGAATAATCTACAATGACATTGTGAAAC
CTCCCCGTGTTGGCCCTGTGACCGATGCACATGGGCATTAGAGGCCCGTAGCTTTCTTGCCTTACCGAATAAATAGGCAA
TAGATTATGTTAGGACTAAAATCCAGCTTCCTGTTTACAATGGGAGGTTTAGGTTTTATAATTTAGATCCAGGGCAACAA
ACCTTCCAAACCGCAA

ORF - retro_etel_970 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 67.52 %
Parental protein coverage: 76.51 %
Number of stop codons detected: 4
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalMETLYRVPFLVLEC-PNLKL-KKPP-WVHMPSAMTVYALVVVSYFLITGGIIYDVIVEPPSVGSMTDEHG
.ETL..VPF.VLEC.P.LKL..K.P.WVHM.SAMT.Y.LVV.SYFL.T.GIIY..IV.PP.VG..TD.HG
RetrocopyLETLCQVPF*VLEC<PSLKL<EKLP<WVHMLSAMTAYVLVV-SYFLLTEGIIYNDIVKPPRVGPVTDAHG
ParentalHQRPVAFLAYRVNGQYIMEGLASSFLFTMGGLGFIILDRSNAPNIPK
H.RPVAFL.YR.N.Q.IM.GL.SSFLFTMGGLGFII....N.P..P.
RetrocopyH*RPVAFLPYRINRQ*IMLGLKSSFLFTMGGLGFII*IQGNKPSKPQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Echinops telfairi was not studied using RNA-Seq expression data.