Parental gene:

ENSCJAG00000013936

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:22:15663161..15672166(-)


>ENSCJAG00000013936
ATGATCGGAGACATCCTGCTGTTCGGGACGTTGCTGATGAATGCCGGGGCGGTGCTGAACTTTAAGCTGAAAAAGAAGGA
CACGCAGGGCTTTGGGGAGGAGTCGAGGGAGCCCAGCACAGGTGACAACATCCGGGAATTCTTGCTGAGCCTCAGATACT
TTCGAATCTTCATCGCCCTGTGGAATATCTTCATGATGTTCTGCATGATCGTCTTGAGAAAACTCAAGCAGATTACCTTT
CCATCTAGCATTGGGGCCGTAATTCCGATACCACTGTTACTGAATTGTGAGATTTGCTGTAAATGGATTTAG

Library Parental gene expression (RPM)
SRP051959_spleen 7 .37 RPM
SRP051959_skeletal_muscle 5 .02 RPM
SRP051959_lymph_node 6 .32 RPM
SRP051959_lung 7 .71 RPM
SRP051959_liver 10 .46 RPM
SRP051959_kidney 7 .61 RPM
SRP051959_heart 6 .86 RPM
SRP051959_colon 5 .64 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000010105 ortholog_one2one 1 retrogene
retro_amel_1688,
Canis familiaris ENSCAFG00000015643 ortholog_one2one 1 retrogene
retro_cfam_1927,
Equus caballus ENSECAG00000026861 ortholog_one2one 1 retrogene
retro_ecab_640,
Felis catus ENSFCAG00000016411 ortholog_one2one 1 retrogene
retro_fcat_934,
Homo sapiens ENSG00000214046 ortholog_one2many 1 retrogene
retro_hsap_2244,
Mus musculus ENSMUSG00000044600 ortholog_one2one 1 retrogene
retro_mmus_450,
Nomascus leucogenys ENSNLEG00000005569 ortholog_one2one 1 retrogene
retro_nleu_1315,
Pongo abelii ENSPPYG00000009694 ortholog_one2one 2 retrogenes
retro_pabe_1964, retro_pabe_2031,
Pan troglodytes ENSPTRG00000010650 ortholog_one2one 1 retrogene
retro_ptro_1589,
Rattus norvegicus ENSRNOG00000042037 ortholog_one2one 1 retrogene
retro_rnor_2694,
Sus scrofa ENSSSCG00000013863 ortholog_one2one 1 retrogene
retro_sscr_955,
Tarsius syrichta ENSTSYG00000009556 ortholog_one2one 1 retrogene
retro_tsyr_1550,
Tursiops truncatus ENSTTRG00000015020 ortholog_one2one 2 retrogenes
retro_ttru_136, retro_ttru_597,
Vicugna pacos ENSVPAG00000006699 ortholog_one2one 1 retrogene
retro_vpac_65,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1223 75.34 68.93
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Download FASTA sequences of all ENSCJAG00000013936 retrocopies