Parental gene:

KLHL9, ENSCJAG00000002447

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:X:105963825..106158394(-)


>ENSCJAG00000002447
ATGCCATTGAAATGGAAAACGAGCTCTCCTGCTATCTGGAAATTCCCAGTTCCTGTGCTTAAAACATCCAGGTCAACTCC
ACTTTCTCCAGCATACATATCTCTCGTGGAAGAGGAAGACCAACACATGAAATTGTCCCTTGGAGGCAGCGAAATGGGCC
TGTCATCCCATTTGCAGTCTTCCAAGGCAGGACCTACACGCATCTTTACCAGCAATACCCACAGTTCTGTGGTGTTACAG
GGCTTTGACCAGCTTCGACTTGAAGGATTGCTTTGTGATGTGACCCTGATGCCAGGTGACACTGATGATGCTTTTCCTGT
GCATAGAGTTATGATGGCATCTGCTAGTGATTACTTCAAGGCTATGTTCACAGGTGGAATGAAAGAACAAGATTTAATGT
GCATTAAACTTCATGGCGTGAGCAAAGTTGGTCTAAGGAAAATTATTGATTTCATTTATACTGCAAAGCTTTCTCTTAAT
ATGGACAACCTTCAAGACACGCTGGAAGCTGCCAGTTTTCTACAGATTCTGCCAGTTTTGGACTTCTGTAAAGTATTTCT
CATATCTGGGGTCACTTTAGACAATTGTGTTGAAGTTGGACGGATTGCCAACACCTACAATCTGACTGAAGTGGATAAAT
ACATTAACAGTTTCGTCTTGAAGAATTTTCCTGCATTGCTGAGCACAGGGGAGTTCTTGAAACTCCCTTTTGAGCGTCTT
GCCTTTGTGCTTTCCAGTAATAGCCTTAAGCACTGTACTGAACTTGAGCTCTTTAAGGCTACCTGTCGTTGGCTTCGCCT
GGAAGAGCCTCGGATGGACTTTGCTGCAAAATTAATGAAGAACATACGATTTCCACTGATGACACCTCAGGAGCTCATTA
ATTACGTGCAAACGGTGGATTTCATGAGAACTGACAATACTTGTGTGAATTTGCTTTTGGAAGCCAGCAATTACCAAATG
ATGCCATACATGCAGCCAGTTATGCAGTCAGACAGGACTGCCATTAGGTCTGACACCACTCACTTGGTTACACTAGGAGG
AGTGCTGAGGCAGCAGCTGGTTGTCAGTAAAGAATTGCGCATGTATGATGAAAAGGCCCATGAGTGGAAATCGTTAGCCC
CTATGGATGCCCCAAGGTACCAGCATGGCATCGCTGTCATTGGAAATTTTCTCTATGTTGTTGGTGGACAGAGTAATTAT
GACACAAAAGGAAAAACAGCAGTTGATACAGTCTTCAGATTTGATCCTCGATACAATAAATGGATGCAAGTTGCATCTTT
AAATGAAAAGCGCACCTTCTTCCACCTAAGTGCCCTCAAAGGATATCTGTATGCAGTTGGTGGGCGAAATGCAGCAGGTG
AACTGCCTACAGTAGAATGTTACAATCCAAGAACAAATGAATGGACCTATGTTGCCAAAATGAGTGAGCCCCACTATGGC
CATGCTGGAACTGTGTATGGAGGAGTGATGTATATTTCAGGAGGAATTACTCATGATACTTTCCAAAAGGAGCTCATGTG
CTTTGACCCTGATACTGACAAATGGATCCAGAAGGCACCAATGACCACTGTCAGAGGTCTGCATTGCATGTGTACAGTGG
GAGAAAGGCTCTATGTCATTGGTGGCAATCACTTCAGAGGAACAAGTGATTATGATGATGTCCTAAGCTGTGAATACTAT
TCACCTATCCTTGACCAGTGGACCCCAATTGCTGCCATGTTAAGAGGGCAGAGTGATGTTGGGGTCGCTGTCTTTGAAAA
TAAAATCTATGTGGTTGGGGGGTATTCTTGGAATAATCGTTGCATGGTAGAGATAGTGCAGAAATACGATCCAGATAAAG
ATGAATGGCATAAGGTTTTTGATCTCCCAGAATCCCTTGGTGGCATTCGTGCTTGCACACTCACAGTTTTTCCACCGGAA
GAAACCACACCATCACCTTCTAGAGAGTCCCCTCTTTCTGCACCTTAA

Library Parental gene expression (RPM)
SRP051959_spleen 4 .60 RPM
SRP051959_skeletal_muscle 2 .14 RPM
SRP051959_lymph_node 0 .73 RPM
SRP051959_lung 12 .62 RPM
SRP051959_liver 3 .47 RPM
SRP051959_kidney 13 .09 RPM
SRP051959_heart 7 .75 RPM
SRP051959_colon 2 .33 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001782 ortholog_one2one 1 retrogene
retro_amel_749,
Bos taurus ENSBTAG00000000501 ortholog_one2one 1 retrogene
retro_btau_44,
Canis familiaris ENSCAFG00000018272 ortholog_one2one 1 retrogene
retro_cfam_422,
Cavia porcellus ENSCPOG00000011268 ortholog_one2one 1 retrogene
retro_cpor_590,
Equus caballus ENSECAG00000008237 ortholog_one2one 1 retrogene
retro_ecab_622,
Loxodonta africana ENSLAFG00000008122 ortholog_one2one 1 retrogene
retro_lafr_1018,
Myotis lucifugus ENSMLUG00000027393 ortholog_one2one 1 retrogene
retro_mluc_204,
Macaca mulatta ENSMMUG00000002293 ortholog_one2one 1 retrogene
retro_mmul_42,
Mustela putorius furo ENSMPUG00000001730 ortholog_one2one 1 retrogene
retro_mputfur_169,
Mus musculus ENSMUSG00000036782 ortholog_one2one 1 retrogene
retro_mmus_121,
Nomascus leucogenys ENSNLEG00000014736 ortholog_one2one 1 retrogene
retro_nleu_1031,
Oryctolagus cuniculus ENSOCUG00000001993 ortholog_one2one 1 retrogene
retro_ocun_254,
Pongo abelii ENSPPYG00000020658 ortholog_one2one 1 retrogene
retro_pabe_60,
Pteropus vampyrus ENSPVAG00000015989 ortholog_one2one 1 retrogene
retro_pvam_1485,
Rattus norvegicus ENSRNOG00000014029 ortholog_one2one 1 retrogene
retro_rnor_154,
Sus scrofa ENSSSCG00000012637 ortholog_one2many 1 retrogene
retro_sscr_51,
Ictidomys tridecemlineatus ENSSTOG00000012035 ortholog_one2one 1 retrogene
retro_itri_124,
Tarsius syrichta ENSTSYG00000002521 ortholog_one2one 1 retrogene
retro_tsyr_19,
Tursiops truncatus ENSTTRG00000014098 ortholog_one2one 1 retrogene
retro_ttru_26,
Vicugna pacos ENSVPAG00000003091 ortholog_one2one 1 retrogene
retro_vpac_8,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3406 91.34 96.95
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Download FASTA sequences of all ENSCJAG00000002447 retrocopies