RetrogeneDB ID: | retro_tbel_3899 | ||
Retrocopy location | Organism: | Treeshrew (Tupaia belangeri) | |
| Coordinates: | scaffold_3014:101517..101825(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | GNB2L1 | ||
| Ensembl ID: | ENSTBEG00000014661 | ||
| Aliases: | None | ||
| Description: | guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 [Source:HGNC Symbol;Acc:4399] |
Retrocopy-Parental alignment summary:
>retro_tbel_3899
TCTACAGATGGATCCCTCCATGCTTCTGGGGGCAAGTGCGACCAGGCCATGCTGTGGGAGCTCAACAAAGGCAAGCACCT
TTACACGCTGGACGGTGGGGACATCAACACCCTGTGCTTTAGCCCCAACTGCTACTGGCTCTGTGCTGCCATGGGCCCCA
GCATCAAGAACTTCGATTTAGAGGGCAAGTTCATCATGGATGAACCGAAGCGGGGAGTTACCAGTACCTGCGGCAAGGCA
GAGCTGCCCCAGTGCACTCTCAGGCCTGGTCTGCTGAGAGGCAGACTCTGCTGGCCACACAGACAAAC
ORF - retro_tbel_3899 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 72.38 % |
| Parental protein coverage: | 51.74 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDEL |
| S.DGSL.ASGGK..QAMLW.LN.GKHLYTLDGGDI.N.LCFSPN.YWLCAA.GPSIK..DLEGK.I.DE. | |
| Retrocopy | STDGSLHASGGKCDQAMLWELNKGKHLYTLDGGDI-NTLCFSPNCYWLCAAMGPSIKNFDLEGKFIMDEP |
| Parental | KQEVISTSSKAEPPQCT-SLAWSADGQTLFAGYTD |
| K..V.ST..KAE.PQCT.S.AWSA..QTL.A..T. | |
| Retrocopy | KRGVTSTCGKAELPQCT<SQAWSAERQTLLATQTN |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Tupaia belangeri was not studied using RNA-Seq expression data.
Tupaia belangeri was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_tbel_3899 retrocopy.
Tupaia belangeri was not studied using FANTOM5 data.
retro_tbel_3899 was not experimentally validated.