Parental gene:

ENSPPYG00000019939

Aliases:None
Description:None
Organism:Orangutan (Pongo abelii)
Coordinates:Un:6887003..6894152(-)


>ENSPPYG00000019939
ATGGGGCTCGCCATTTTGCATGGTCGAGCGGGTATTTCCGGTTCCGGCGGGGGGCTTTTCTCTCTTTCACTGCAAGGCGG
CGGCGGGAGCGGTTGTGGTGCTAGTTTTTCTAAGCCATCCAGTGCCATCCTCGTCGCTGCAGCGACACACGCGCTCGCCG
CCGCCATGACTGAGCAGATGACCCTTCGTGGCACCCTCAAGGGCCACAACGGCTGGGTAACCCAGATCGCTACTACTCCG
CAGTTCCCGGACATGATCCTCTCCGCCTCTCGAGATAAGACCATCATCATGTGGAAACTGACCAGGGATGAGACCAACTA
TGGAATTCCACAGCGTGCTCTGCGGGGTCACTCCCACTTTGTTAGTGATGTGGTTATCTCCTCAGATGGCCAGTTTGCCC
TCTCAGGATCCTGGGATGGAACCCTGCGCCTCTGGGATCTCACAACGGGCACCACCACGAGGCGATTTGTGGGCCATACC
AAGGATGTGCTGAGTGTGGCCTTCTCCTCTGACAACCGGCAGATTGTCTCTGGATCTCGAGATAAAACCATCAAGCTATG
GAATACCCTGGGTGTGTGCAAATACACTGTCCAGGATGAGAGCCACTCAGAGTGGGTGTCTTGTGTCCGCTTCTCACCCA
ACAGCAGCAACCCTATCATCGTCTCCTGCGGCTGGGACAAGCTGGTCAAGGTATGGAACCTGGCTAACTGCAAGCTGAAG
ACCAACCACATTGGCCACACAGGCTATCTGAACACGGTGACTGTCTCTCCAGATGGATCCCTCTGTGCTTCTGGAGGCAA
GGATGGCCAGGCCATGTTATGGGATCTCAACGAAGGCAAACACCTTTACACGCTAGATGGTGGGGACATCATCAACGCCC
TGTGCTTCAGCCCTAACCGCTACTGGCTGTGTGCTGCCACAGGCCCCAGCATCAAGATCTGGGATTTAGAGGGAAAGATC
ATTGTAGACGAACTGAAGCAAGAAGTTATCAGTACCAGCAGCAAGGCAGAACCACCCCAGTGCACCTCCCTGGCCTGGTC
TGCTGATGGCCAGACTCTGTTTGCTGGCTACACAGACAACCTGGTGCGAGTGTGGCAGGTGACCATTGGCACGCGCTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 56 .78 RPM
SRP007412_cerebellum 64 .33 RPM
SRP007412_heart 121 .38 RPM
SRP007412_kidney 232 .69 RPM
SRP007412_liver 213 .45 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000012008 ortholog_one2many 1 retrogene
retro_acar_185,
Ailuropoda melanoleuca ENSAMEG00000000004 ortholog_many2many 1 retrogene
retro_amel_1627,
Bos taurus ENSBTAG00000019648 ortholog_one2many 1 retrogene
retro_btau_1461,
Canis familiaris ENSCAFG00000024818 ortholog_one2many 1 retrogene
retro_cfam_1824,
Callithrix jacchus ENSCJAG00000018752 ortholog_one2many 1 retrogene
retro_cjac_2876,
Cavia porcellus ENSCPOG00000008724 ortholog_one2many 1 retrogene
retro_cpor_687,
Dipodomys ordii ENSDORG00000010735 ortholog_one2many 1 retrogene
retro_dord_117,
Equus caballus ENSECAG00000022567 ortholog_one2many 3 retrogenes
retro_ecab_172, retro_ecab_218, retro_ecab_986,
Erinaceus europaeus ENSEEUG00000008729 ortholog_one2many 1 retrogene
retro_eeur_368,
Echinops telfairi ENSETEG00000016024 ortholog_many2many 3 retrogenes
retro_etel_1135, retro_etel_114, retro_etel_2086,
Homo sapiens ENSG00000204628 possible_ortholog 1 retrogene
retro_hsap_3226,
Gorilla gorilla ENSGGOG00000025367 possible_ortholog 1 retrogene
retro_ggor_2194,
Macropus eugenii ENSMEUG00000011055 ortholog_many2many 3 retrogenes
retro_meug_1095, retro_meug_1109, retro_meug_1532,
Myotis lucifugus ENSMLUG00000015507 ortholog_one2many 1 retrogene
retro_mluc_811,
Macaca mulatta ENSMMUG00000003604 ortholog_one2many 1 retrogene
retro_mmul_1956,
Monodelphis domestica ENSMODG00000004091 ortholog_one2many 1 retrogene
retro_mdom_1426,
Mustela putorius furo ENSMPUG00000001148 ortholog_many2many 2 retrogenes
retro_mputfur_1103, retro_mputfur_1111,
Mus musculus ENSMUSG00000020372 ortholog_one2many 1 retrogene
retro_mmus_3282,
Nomascus leucogenys ENSNLEG00000002604 ortholog_one2many 1 retrogene
retro_nleu_729,
Ornithorhynchus anatinus ENSOANG00000002600 ortholog_one2many 1 retrogene
retro_oana_127,
Otolemur garnettii ENSOGAG00000014924 ortholog_many2many 2 retrogenes
retro_ogar_1257, retro_ogar_1591,
Pan troglodytes ENSPTRG00000022734 possible_ortholog 1 retrogene
retro_ptro_2178,
Rattus norvegicus ENSRNOG00000002390 ortholog_one2many 3 retrogenes
retro_rnor_1831, retro_rnor_2130, retro_rnor_895,
Ictidomys tridecemlineatus ENSSTOG00000007063 ortholog_one2many 1 retrogene
retro_itri_1752,
Tupaia belangeri ENSTBEG00000014661 ortholog_one2many 2 retrogenes
retro_tbel_3897, retro_tbel_3899,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_149 96.82 93.01
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Download FASTA sequences of all ENSPPYG00000019939 retrocopies