RetrogeneDB - Retrocopy retro_gmax

                        
>retro_gmax_7
ATGGATAATGATGACAGTCTAAAGAATTGGGTATCCGACAAATTGATGTCTCTATTAGGATATTCTCAGCCCACCCTTGT

TCGGTACATGATCGGACTATCCCACCAAGCTTCTTCACCGGCTCATTTGGTTGACAAACTAGTGGAGTTTCGGATCCCAT

CATCAAGCGACACTCGCGCATTCGCGGAGGAAATTTTTTCTAGGGTTCCTCGTGTACCATCGAGTTTGAATCAGTATCAG

AAACAAGAGAGGGAGGCTGCAATACTGGCAAGGAAGCAGAAGACTTACACAATTTTAAAGGCTGATGACAATAGTGACCA

TGCATATGCATATAAATCTAGAAAGCCTGATAATCGTAGCAAACGTTTCAGGAAGAAATCAGAAGTTCACGATGATGAGG

GAATTGCGAGAAAGGAGAGGGGGAGACAAGTTAAGAGAAGAATTTCCCCTCATAAAGATAATCATTCAGATTCAGAAGAA

GAAGAAGAAATATTGGAAGATCAAAGAGAGAAGAAGGAATTAGAGCGGCATATGAGAGAAAGAGACGAAGCAGTGACACG

GAAGTTGGTGACTGAACCGAGATTAACGCGAAAGGAGAAAGAAGAGGCCATTCGAAGATCTAATGCTGCAGAGAATGATG

ACATTCAAACCTTGAGAAATTTTTCGAGGCAAGAATACTTGAAGAAAAGGGAGGAAAAGAAATTGCTACAACTGAGAGAT

GATATAGAAGATGAGCAATATCTGTTTGAAGGTGTTGAGCTTTCAGAAGCAGAATTATGCAAACTGAGGTACGATAAAGA

GATGTATGAGCTTGTGAAGAAGCGGTCGAAAGAGGATGATAATGTGAATGAGTACTATAGAATGCCAGAAGCTTATGATC

ATGAAGGCGGTGTTAACCAGGAGAAGAGGTTTTCTGTGGCTATGCAGCGTTACAGGGATCCAAATGCTGAGGATAAGATG

AATCCATTCGCCGAACAGGAGGCCTTGGAGGAACGTCAAATTCGAAAGGCAACGTTGAAGTTTGACTCAAGAAATAGAAA

ACAAGCCTTTGATGAGTATCAGTTTGTGTTTGATGATCAGATTGATTTTGTCAAGACATCGGTAATAGATGGAGATAAGT

TTGATTATGAAGAGATGGTGGAAGATTCACATGAAAAGTCCAGAGCAAAGACAGCTAGGGAAGCACTTCAGGAAGAGAGG

GAAAAGCTACCCATTTACCCTTATCGGGAGCAATTGCTCCAAGCTGTTCACGATCACCAGGTACTTATCATTGATGGTGA

AACTGGTTCGGGGAAGACTACACAAATTCCTCAATACCTTCATGAAGCGGGCTACACAAAACATGGAATGGTTGCGTGTA

CTCAGCCGCGACGCCTTGCTGCTATAAGTGTTGCTGCTCGAGTTTCCAAAGAAATGGGTGTTAAATTAGGACATGAGGTT

GGCTACTCCATCCGTTTTGAAGATTGTACAACAGATAAGACAGTGATTAAATACATGACAGATGGAATGTTGCTGAGGGA

ATTCCTTGGTGAACCTGATTTGGCAAGTTATAGTGTTTTGATCGTGGATGAGGCTCACGAAAGAACACTATCAACAGATA

TTCTGTTTGGATTAGTAAAGGATATTGCTCGTTTCAGACCTGATCTCAAGTTGCTGATATCAAGTGCTACACTTGATGCT

GACAAGTTCAGCGATTACTTTGATTCTGCACCAAAATTCAAAATTCCAGGGAGACGGTATCCTTATGAAATATTTAACTT

TACCGAAGCACCAAGTGACTACTTAGATGCAGCAATTGAGGCCTCACTCAAAATCCATGTCACTGAACCTCCTGGAGATA

TATTGGTATTCCTTACGGGTCAAGAAGAAATTGAAACAGCTGAAGAAAACTTGAAGCATCGGATCAGAGGCTTGGGGACT

AAGATTGGTGAGTTAAAAATCTGCCCTATATATGCCAACCTACCAACTGAACTTCAAGCTAAAATATTTGATCCCACTCC

TGAAAGGGTGCGAAAGGTTGTCCTTGCTACTAATATTGCAGAAACGTCATTGACAATTGATGGCATCAAGTATGTCATTG

ATCCAGGATATTGTAAGATGAAGAGTTATAATCCAAGAACCGGAATGGAGTCTTTGAAAGTAACTCCAATCTCAAAAGCT

TCAGCTATGCAAAGAGCCGGTCGTTGTGGAAGAACAGGTCCTGGTAAGTGCTTCCAACTGTATACTGCATATACTTTTCA

CAAGGAAATGGACGATAACACTGTACCAGAAATACAGCGGACTAACCTTGCAAATGTGGTTTTAACTTTAAAATGTCTTG

GTATTGACAATGTAATGCATTTTGATTTTATGGATCCTCCATCTGATGATGCCTTATTGAAAGCTCTTGAGCTTTTATAT

GCATTAAGTGCATTGAATAAGTTTGGTGAGTTAACTAAGGTTGGTAGACGGATGGCAGAGTTCCCTCTTGATCCTACATT

GTCAAAAATGATAGTGGCCTCAGAAAAGTTCAAGTGTTCAGATGATATAATCTCTATTGCTGCTATGCTTTCTGTTGGTA

AGTCAATATTCTACCGTCCAAAGGATAAACAAGTATATGCAGACAATGCAATGAGGAATTTTCACACTGGAAATGTTGGA

GACCATATTGCATTACTAAGGGTCTACAATTCATGGAAGGAGACCAATTATTCAACACAATGGTGTTATGAAAATTACAT

ACAGGTAAGGAGCATGAGACAGGCTAGGGATATCCGTGATCAACTTGCAGGTCTTTTAGAGAGGGTTGAGATCGAACTAA

CTTCAAATTCTAGTGATTTCGATGCCATCAAGAAATCCATTACATCTGGGTTTTTCCCACACTCTGCGAGACTGCAAAAG

TATGGAATATATAAGACTGTTAAACAATCACAGAATGTTCGCATACACCCTGGTTCGGGGCTGGCGCAGGTTCTTCCTAG

ATGGGTTGTATACCATGAACTAGTACTCACAACCAAGGAATATATGAGGCAGGTGACAGAGATAAATCCAGGGTGGCTGG

CGGAGATAGCCCCTCACTATTACCAGCTGAAGGATGTTGAAGATTCATATTCCAACTAG

ORF - retro_gmax_7 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

Percent Identity:	83.21 %
Parental protein coverage:	87.67 %
Number of stop codons detected:	0
Number of frameshifts detected:	0

Retrocopy - Parental Gene Alignment:

                                ParentalSRSSDKHKKRFRKKTEVQDDQDDEVILRKEKERQVKRRTSPDED--SDSESEEERLKDQREKEELEQHMR
SR..D...KRFRKK.EV....DDE.I.RKE..RQVKRR.SP..D..SDSE.EEE.L.DQREK.ELE.HMR
RetrocopySRKPDNRSKRFRKKSEVH---DDEGIARKERGRQVKRRISPHKDNHSDSEEEEEILEDQREKKELERHMR
ParentalERDAAGTRKL-TEQKLTRKEEEEAIRRSKAAEQDDIQSLRKVSRQEYLKKREEKKLEELRDDIEDEQYLF
ERD.A.TRKL.TE..LTRKE.EEAIRRS.AAE.DDIQ.LR..SRQEYLKKREEKKL..LRDDIEDEQYLF
RetrocopyERDEAVTRKLVTEPRLTRKEKEEAIRRSNAAENDDIQTLRNFSRQEYLKKREEKKLLQLRDDIEDEQYLF
ParentalEGVKLSEAEYRELRYKKEIYELVKKRSEEADNANEY-RMPEAYDQEGGVNQEKRFSVAMQRYRDLNAEDK
EGV.LSEAE...LRY.KE.YELVKKRS.E.DN.NEY.RMPEAYD.EGGVNQEKRFSVAMQRYRD.NAEDK
RetrocopyEGVELSEAELCKLRYDKEMYELVKKRSKEDDNVNEYYRMPEAYDHEGGVNQEKRFSVAMQRYRDPNAEDK
ParentalMNPFAEQEAWEEHQIGKATLKFGSKNKKQVSDDYQYVFEDQIDFIKASVMEGDKFDYEEM-EDSHEKSKA
MNPFAEQEA.EE.QI.KATLKF.S.N.KQ..D.YQ.VF.DQIDF.K.SV..GDKFDYEEM.EDSHEKS.A
RetrocopyMNPFAEQEALEERQIRKATLKFDSRNRKQAFDEYQFVFDDQIDFVKTSVIDGDKFDYEEMVEDSHEKSRA
ParentalKSAFEALQEERKKLPMFPYRDELLEAVHNHQVLVIVGETGSGKTTQIPQYLHEAGYTKRGMIACTQPRRV
K.A.EALQEER.KLP..PYR..LL.AVH.HQVL.I.GETGSGKTTQIPQYLHEAGYTK.GM.ACTQPRR.
RetrocopyKTAREALQEEREKLPIYPYREQLLQAVHDHQVLIIDGETGSGKTTQIPQYLHEAGYTKHGMVACTQPRRL
ParentalAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPDLASYSVVMVDEAHERT
AA.SVAARVS.EMGVKLGHEVGYSIRFEDCT..KT..KYMTDGMLLREFLGEPDLASYSV..VDEAHERT
RetrocopyAAISVAARVSKEMGVKLGHEVGYSIRFEDCTTDKTVIKYMTDGMLLREFLGEPDLASYSVLIVDEAHERT
ParentalLSTDILFGLVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFRIPGRRYPVEI-SYTKAPEADYLDAA
LSTDILFGLVKDIARFRPDLKLLISSATLDA.KFSDYFDSAP.F.IPGRRYP.EI...T.AP..DYLDAA
RetrocopyLSTDILFGLVKDIARFRPDLKLLISSATLDADKFSDYFDSAPKFKIPGRRYPYEIFNFTEAP-SDYLDAA
ParentalIVTSLQIHVTQPPGDILVFLTGQEEIETAEEILKHRTRGLGTKISELIICPIYANLPTELQAKIFEPTPE
I..SL.IHVT.PPGDILVFLTGQEEIETAEE.LKHR.RGLGTKI.EL.ICPIYANLPTELQAKIF.PTPE
RetrocopyIEASLKIHVTEPPGDILVFLTGQEEIETAEENLKHRIRGLGTKIGELKICPIYANLPTELQAKIFDPTPE
ParentalGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMESLLVTPISKASANQRAGRSGRTGPGKCF
..RKVVLATNIAETSLTIDGIKYVIDPG.CKMKSYNPRTGMESL.VTPISKASA.QRAGR.GRTGPGKCF
RetrocopyRVRKVVLATNIAETSLTIDGIKYVIDPGYCKMKSYNPRTGMESLKVTPISKASAMQRAGRCGRTGPGKCF
ParentalRLYTAYNYHNDLDDNTVPEIQRTNLANVVLTLKSLGIHDLLNFDFMDPPPAEALLKALELLFALSALNKL
.LYTAY..H...DDNTVPEIQRTNLANVVLTLK.LGI.....FDFMDPP...ALLKALELL.ALSALNK.
RetrocopyQLYTAYTFHKEMDDNTVPEIQRTNLANVVLTLKCLGIDNVMHFDFMDPPSDDALLKALELLYALSALNKF
ParentalGELTKVGRRMAEFPLDPMLSKMIVASENYKCSDDIISIAAMLSVGNSIFYRPKDKQVHADNARLNFHTGN
GELTKVGRRMAEFPLDP.LSKMIVASE..KCSDDIISIAAMLSVG.SIFYRPKDKQV.ADNA..NFHTGN
RetrocopyGELTKVGRRMAEFPLDPTLSKMIVASEKFKCSDDIISIAAMLSVGKSIFYRPKDKQVYADNAMRNFHTGN
ParentalVGDHMALLKVYNSWKETNYSTQWCYENYIQVRSMKRARDIRDQLAGLLERVEIELTSNANDLDAIKKSIT
VGDH.ALL.VYNSWKETNYSTQWCYENYIQVRSM..ARDIRDQLAGLLERVEIELTSN..D.DAIKKSIT
RetrocopyVGDHIALLRVYNSWKETNYSTQWCYENYIQVRSMRQARDIRDQLAGLLERVEIELTSNSSDFDAIKKSIT
ParentalSGFFPHSARLQKNGSYRTVKHSQTVHIHPSSGLAQVLPRWVVYHELVLTTKEYMRQVTELKPEWLVEIAP
SGFFPHSARLQK.G.Y.TVK.SQ.V.IHP.SGLAQVLPRWVVYHELVLTTKEYMRQVTE..P.WL.EIAP
RetrocopySGFFPHSARLQKYGIYKTVKQSQNVRIHPGSGLAQVLPRWVVYHELVLTTKEYMRQVTEINPGWLAEIAP
ParentalHYYQLKDVEDSYS
HYYQLKDVEDSYS
RetrocopyHYYQLKDVEDSYS

                            

                            Legend:
                            
                                *Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide

                        

RNA-Seq - click to see more details

Glycine max was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Glycine max was not studied using ChIP-Seq data.

EST - click to see more details

Glycine max was not studied using EST data.

TSS - click to see more details

Glycine max was not studied using FANTOM5 data.

Lab - click to see more details

retro_gmax_7 was not experimentally validated.

Retrocopy orthology:

Glycine max does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:

Parental genes homology involve 15 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Oryza sativa indica	BGIOSGA027162	1 retrocopy	retro_oind_65,
Brassica oleracea	Bo5g087070	1 retrocopy	retro_bole_7,
Brassica rapa	Bra010168	1 retrocopy	retro_brap_26,
Brachypodium distachyon	BRADI1G61220	1 retrocopy	retro_bdis_4,
Glycine max	GLYMA06G21821	1 retrocopy	retro_gmax_7 ,
Leersia perrieri	LPERR08G09260	1 retrocopy	retro_lper_14,
Hordeum vulgare	MLOC_5589	1 retrocopy	retro_hvul_14,
Oryza meridionalis	OMERI08G09070	1 retrocopy	retro_omer_5,
Oryza nivara	ONIVA08G11780	1 retrocopy	retro_oniv_26,
Oryza punctata	OPUNC08G10350	1 retrocopy	retro_opun_23,
Oryza glaberrima	ORGLA08G0098600	1 retrocopy	retro_ogla_26,
Oryza rufipogon	ORUFI08G12410	1 retrocopy	retro_oruf_44,
Prunus persica	PRUPE_ppa000714mg	1 retrocopy	retro_pper_32,
Sorghum bicolor	Sb04g022460	1 retrocopy	retro_sbic_37,
Setaria italica	Si021302m.g	1 retrocopy	retro_sita_41,

	RetrogeneDB ID:	retro_gmax_7
Retrocopy location	Organism:	*Soybean (Glycine max)*
	Coordinates:	1:4377133..4380232(-)
	Located in intron of:	None
Retrocopy information	Ensembl ID:	GLYMA01G04791
	Aliases:	None
	Status:	KNOWN_PROTEIN_CODING
Parental gene information	Parental gene summary:
	Parental gene symbol:	None
	Ensembl ID:	GLYMA06G21821
	Aliases:	None
	Description:	None

Parental	SRSSDKHKKRFRKKTEVQDDQDDEVILRKEKERQVKRRTSPDED--SDSESEEERLKDQREKEELEQHMR
	SR..D...KRFRKK.EV....DDE.I.RKE..RQVKRR.SP..D..SDSE.EEE.L.DQREK.ELE.HMR
Retrocopy	SRKPDNRSKRFRKKSEVH---DDEGIARKERGRQVKRRISPHKDNHSDSEEEEEILEDQREKKELERHMR

Parental	ERDAAGTRKL-TEQKLTRKEEEEAIRRSKAAEQDDIQSLRKVSRQEYLKKREEKKLEELRDDIEDEQYLF
	ERD.A.TRKL.TE..LTRKE.EEAIRRS.AAE.DDIQ.LR..SRQEYLKKREEKKL..LRDDIEDEQYLF
Retrocopy	ERDEAVTRKLVTEPRLTRKEKEEAIRRSNAAENDDIQTLRNFSRQEYLKKREEKKLLQLRDDIEDEQYLF

Parental	EGVKLSEAEYRELRYKKEIYELVKKRSEEADNANEY-RMPEAYDQEGGVNQEKRFSVAMQRYRDLNAEDK
	EGV.LSEAE...LRY.KE.YELVKKRS.E.DN.NEY.RMPEAYD.EGGVNQEKRFSVAMQRYRD.NAEDK
Retrocopy	EGVELSEAELCKLRYDKEMYELVKKRSKEDDNVNEYYRMPEAYDHEGGVNQEKRFSVAMQRYRDPNAEDK

Parental	MNPFAEQEAWEEHQIGKATLKFGSKNKKQVSDDYQYVFEDQIDFIKASVMEGDKFDYEEM-EDSHEKSKA
	MNPFAEQEA.EE.QI.KATLKF.S.N.KQ..D.YQ.VF.DQIDF.K.SV..GDKFDYEEM.EDSHEKS.A
Retrocopy	MNPFAEQEALEERQIRKATLKFDSRNRKQAFDEYQFVFDDQIDFVKTSVIDGDKFDYEEMVEDSHEKSRA

Parental	KSAFEALQEERKKLPMFPYRDELLEAVHNHQVLVIVGETGSGKTTQIPQYLHEAGYTKRGMIACTQPRRV
	K.A.EALQEER.KLP..PYR..LL.AVH.HQVL.I.GETGSGKTTQIPQYLHEAGYTK.GM.ACTQPRR.
Retrocopy	KTAREALQEEREKLPIYPYREQLLQAVHDHQVLIIDGETGSGKTTQIPQYLHEAGYTKHGMVACTQPRRL

Parental	AAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPDLASYSVVMVDEAHERT
	AA.SVAARVS.EMGVKLGHEVGYSIRFEDCT..KT..KYMTDGMLLREFLGEPDLASYSV..VDEAHERT
Retrocopy	AAISVAARVSKEMGVKLGHEVGYSIRFEDCTTDKTVIKYMTDGMLLREFLGEPDLASYSVLIVDEAHERT

Parental	LSTDILFGLVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFRIPGRRYPVEI-SYTKAPEADYLDAA
	LSTDILFGLVKDIARFRPDLKLLISSATLDA.KFSDYFDSAP.F.IPGRRYP.EI...T.AP..DYLDAA
Retrocopy	LSTDILFGLVKDIARFRPDLKLLISSATLDADKFSDYFDSAPKFKIPGRRYPYEIFNFTEAP-SDYLDAA

Parental	IVTSLQIHVTQPPGDILVFLTGQEEIETAEEILKHRTRGLGTKISELIICPIYANLPTELQAKIFEPTPE
	I..SL.IHVT.PPGDILVFLTGQEEIETAEE.LKHR.RGLGTKI.EL.ICPIYANLPTELQAKIF.PTPE
Retrocopy	IEASLKIHVTEPPGDILVFLTGQEEIETAEENLKHRIRGLGTKIGELKICPIYANLPTELQAKIFDPTPE

Parental	GARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMESLLVTPISKASANQRAGRSGRTGPGKCF
	..RKVVLATNIAETSLTIDGIKYVIDPG.CKMKSYNPRTGMESL.VTPISKASA.QRAGR.GRTGPGKCF
Retrocopy	RVRKVVLATNIAETSLTIDGIKYVIDPGYCKMKSYNPRTGMESLKVTPISKASAMQRAGRCGRTGPGKCF

Parental	RLYTAYNYHNDLDDNTVPEIQRTNLANVVLTLKSLGIHDLLNFDFMDPPPAEALLKALELLFALSALNKL
	.LYTAY..H...DDNTVPEIQRTNLANVVLTLK.LGI.....FDFMDPP...ALLKALELL.ALSALNK.
Retrocopy	QLYTAYTFHKEMDDNTVPEIQRTNLANVVLTLKCLGIDNVMHFDFMDPPSDDALLKALELLYALSALNKF

Parental	GELTKVGRRMAEFPLDPMLSKMIVASENYKCSDDIISIAAMLSVGNSIFYRPKDKQVHADNARLNFHTGN
	GELTKVGRRMAEFPLDP.LSKMIVASE..KCSDDIISIAAMLSVG.SIFYRPKDKQV.ADNA..NFHTGN
Retrocopy	GELTKVGRRMAEFPLDPTLSKMIVASEKFKCSDDIISIAAMLSVGKSIFYRPKDKQVYADNAMRNFHTGN

Parental	VGDHMALLKVYNSWKETNYSTQWCYENYIQVRSMKRARDIRDQLAGLLERVEIELTSNANDLDAIKKSIT
	VGDH.ALL.VYNSWKETNYSTQWCYENYIQVRSM..ARDIRDQLAGLLERVEIELTSN..D.DAIKKSIT
Retrocopy	VGDHIALLRVYNSWKETNYSTQWCYENYIQVRSMRQARDIRDQLAGLLERVEIELTSNSSDFDAIKKSIT

Parental	SGFFPHSARLQKNGSYRTVKHSQTVHIHPSSGLAQVLPRWVVYHELVLTTKEYMRQVTELKPEWLVEIAP
	SGFFPHSARLQK.G.Y.TVK.SQ.V.IHP.SGLAQVLPRWVVYHELVLTTKEYMRQVTE..P.WL.EIAP
Retrocopy	SGFFPHSARLQKYGIYKTVKQSQNVRIHPGSGLAQVLPRWVVYHELVLTTKEYMRQVTEINPGWLAEIAP

Parental	HYYQLKDVEDSYS
	HYYQLKDVEDSYS
Retrocopy	HYYQLKDVEDSYS

*	Stop codon
>	Forward frameshift by one nucleotide
<	Reverse frameshift by one nucleotide

RetrogeneDB ID:

retro_gmax_7