Parental gene:

ESP3, Bra010168

Aliases:None
Description:AT1G32490 (E=0.0) EMB2733, ESP3 | ESP3 (ENHANCED SILENCING PHENOTYPE 3); ATP binding / ATP-dependent RNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding
Organism:Chinese cabbage (Brassica rapa)
Coordinates:A06:20414788..20421609(-)


>Bra010168
ATGGCGAGCAATGATTTGAAGACATGGGTTTCGGATAAGCTGATGGGGCTGCTTGGCTATTCTCAAATAACTCTTGTTAA
CTATGTCATTGTAAAGGCTAAGCAATCAAAGTCACCAGCTGAACTTGTTGGAGTGTTGATGGATAACGGATTTGCTTCTT
CTGGTGATACTCGTTCCTTTGCGGAAGAGATTTTTGCTAGAGTTCCTCATCAAACTGCTGCGGTGAATCTTTACCAACAA
CGGGAAGCAGAGGCAGCAATGCTAGTGAGGAAGCAACAAACATATGCTCTTATAGATGATGATGATGATGATGAAGACGA
AGTGGTTAAGGAGAAAAAACCTTCAGCTTCTGAATCTAAGAAGTCAGATAAGGGCAAGAAAAGGTTTAGAAAGAAAAGTG
GGCAGTCAGATGACAGTGATGAAGAGGTGCCTGTAAGAGAGGACAGTAGACACGTTCGAAGAAAGGTTTCTGAAGATGAG
GATGATGGTTCTGAGTCAGAAGAGGAAAGAGTGCGTGACCAAAAGGAGAAAGAAGAACTCGAGCAGCATATAAGAGATCG
TGATACTGCACGGACACGAAAGCTAACGGAGCAAAAGTTGTCAAAGAAAGAGCAAGAGGAGGCTCTTCGAAGAGCGAACG
CTTTGGAGGAGGATGATTTAAACTCCTTAAGGAAAGTTTCAAGACAAGAATATTTGAGGAAGAGGGAACAGAAGAAACTG
GAAGAACTAAGGGATGAGATAGAAGATGAACAATATCTTTTCGCAGATGAAAAGCTCACAGAAACAGAGCTTCGTGAGTT
TAGATACAAGAAAGAGCTTTATGACCTGGTGAAGAAAAGAACACAAGATGAAGATAACGTAGAGGAGTATAGAATTCCAG
ATGCTTATGATGATCAAGAGGGGGGTGTTGATCAGGAGAAGAGATTTGCTGTTGCTGTGCAACGATACAAGGATCTGGAT
TCAAGGGAGAAGATGGATCCATTTGCAGAGCAAGAAGCTTGGGAGGACCATCAGATTGGAAAAGCAAGACTAAAATTTGG
CTCAAAGAACAAAAAAGCCTCAGACGATTATCAGTTTGTGTTCGAGGACCAAATAAATTTTATAAAGGAATCAGTGATGG
CCGGTGAAAATTATGAAGATGATATGCATCCTAAAGAAGCTCAAGATGCGGCTGAAAAAACAGCTTTAGAAGAACTTCAG
GAGGTCAGAAAAAGCCTGCCAATTTACGGGTATCGTGAGCAGTTGCTTCAGGCCGTGGAAGAGCATCAGGTTCTTGTCAT
TGTGGGAGACACTGGTTCAGGAAAGACAACACAAATACCACAATATCTCCATGAAGCTGGTTACACAAAGCGCGGAAAGG
TTGGTTGTACACAGCCCCGAAGAGTTGCAGCTATGAGTGTTGCTGCCCGTGTGGCTCAAGAGATGGGTGTCAAACTTGGA
CATGAGGTTGGCTATTCCATTCGATTTGAGGATTGTACTTCAGATAAAACTGTTCTGAAGTATATGACTGATGGAATGCT
TTTGCGTGAGCTGCTTGGGGAACCAGATCTGGCCAGCTACAGTGTCGTTATTGTAGACGAGGCGCACGAAAGAACCTTGT
CAACCGATATACTGTTTGGATTAGATATAGCGCGGTTTCGACCAGATTTGAAGTTGTTGATATCTAGTGCAACAATGGAT
GCAGAAAAGTTTTCTGATTATTTCGATACAGCGCCGATTTTTAGTTTTCCAGGGAGAAGGTATCCAGTTGAAATTAACTT
TACAAGTGCACCTGAAGCTGATTACATGGACGCAGCAATAGTTACTGTGCTTACTATCCATGTGAGGGAGCCGCTTGGAG
ATATATTGGTCTTCTTAACTGGTCAAGAGGAAATTGAAACCGCAGAAGAAATCTTGAAGCAAAGGATAAGAGGTTTGGGT
ACAAAGATCCGTGAATTAATCATATGCCCGATTTACGCAAACCTTCCAAGCGAACTCCAAGCAAAGATATTTGAGCCAAC
TCCAGAAGGGGCACGTAAAGTAGTCCTAGCGACAAACATTGCTGAAACATCATTGACGATTGATGGTATAAAGTATGTTG
TTGATCCTGGATTTAGCAAGATGAAGTCATATAACCCGAGAACAGGGATGGAGTCTTTGCTGATTACTCCTATCTCCAAG
GCTTCAGCAACTCAACGTGCTGGTCGAGCTGGAAGAACAAGCGCAGGGAAGTGTTACCGTCTGTACACAGCGTTTAATTA
CAACAACGACTTGGAGGAAAACACGGTGCCAGAAGTACAGAGGACGAATCTTGCAAGTGTGGTACTTGCTTTAAAGAGTC
TTGGAATTCATGATCTCATAAACTTTGATTTTATGGACCCTCCACCTGCTGAAGCACTTGTGAAGGCTTTAGAGCTTCTC
TTCGCTCTAGGTGCTCTAAATAAGCTCGGTGAATTGACTAAAGCTGGTAGAAGGATGGCAGAGTTTCCCCTTGATCCGAT
GTTATCGAAGATGATTGTTGTTTCTGACAAGTACAAGTGCTCAGATGAGGTAATATCAATTGCTGCTATGTTGTCAGTTG
GAGGGTCTATCTTCTACCGTCCCAAGGACAAACAGGTTCACGCTGACAATGCAAGAATGAATTTTCACACTGGAAATGTC
GGTGACCATATTGCTTTGCTAAAGGTTTACAGCTCATGGAAGGAAACAAACTACTCTACACAGTGGTGCTATGAGAACTA
CATTCAGGTACGGAGCATGAAAAGAGCCAGAGATATCCGTGACCAGTTGGAAGGACTTCTCGAGAGAGTGGAGATAGAAA
TCAGCTCAAACATGAACGAATTGGATTCAGTTAGAAAGTCCATTGTAGCTGGTTTCTTCCCGCACACTGCGAAGCTGCAG
AAGAATGGATCATATCGAACTGTGAAGCATCCCCAGACAGTGCACATACATCCCAATTCAGGCTTATCTCAGGTGTTGCC
AAGATGGGTTGTATATCATGAACTAGTGCTCACCTCCAAGGAATATATGCGACAGGTAACGGAGTTGAAACCAGAGTGGT
TGATTGAGTTAGCTCCTCACTACTACCAGCGCAAGGACGTTGAAGATGATGCATCAAAGAAAATGCCCAAAGGAGCTGGT
AAAGCTGCGATCTAA

Species Parental gene accession Homology type Retrogenes number
Oryza sativa indica BGIOSGA027162 ortholog_many2many 1 retrogene
retro_oind_65,
Brassica oleracea Bo5g087070 ortholog_one2one 1 retrogene
retro_bole_7,
Brassica rapa Bra000445 within_species_paralog 1 retrogene
retro_brap_32,
Brachypodium distachyon BRADI1G61220 ortholog_many2many 1 retrogene
retro_bdis_4,
Glycine max GLYMA06G21821 ortholog_one2many 1 retrogene
retro_gmax_7,
Leersia perrieri LPERR08G09260 ortholog_many2many 1 retrogene
retro_lper_14,
Hordeum vulgare MLOC_5589 ortholog_many2many 1 retrogene
retro_hvul_14,
Oryza meridionalis OMERI08G09070 ortholog_many2many 1 retrogene
retro_omer_5,
Oryza nivara ONIVA08G11780 ortholog_many2many 1 retrogene
retro_oniv_26,
Oryza punctata OPUNC08G10350 ortholog_many2many 1 retrogene
retro_opun_23,
Oryza glaberrima ORGLA08G0098600 ortholog_many2many 1 retrogene
retro_ogla_26,
Oryza rufipogon ORUFI08G12410 ortholog_many2many 1 retrogene
retro_oruf_44,
Prunus persica PRUPE_ppa000714mg ortholog_one2many 1 retrogene
retro_pper_32,
Sorghum bicolor Sb04g022460 ortholog_many2many 1 retrogene
retro_sbic_37,
Setaria italica Si021302m.g ortholog_many2many 1 retrogene
retro_sita_41,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_brap_26 72.01 60.54
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Download FASTA sequences of all Bra010168 retrocopies