Parental gene:

ESP3, Bo5g087070

Aliases:None
Description:RNA helicase family protein [Source:TAIR;Acc:AT1G32490](projected from arabidopsis_thaliana,AT1G32490)
Organism:Brassica oleracea
Coordinates:C5:28865843..28872640(+)


>Bo5g087070
ATGGCGAGCAATGATTTGAAGACATGGGTTTCGGATAAGCTGATGGTGCTACTTGGCTATTCTCAAATAACTCTTGTTAA
CTATGTCATTGTAAAGGCTAAACAATCAAAATCACCAGCTGAACTTGTTGGAGTGTTGATGGATAACGGATTTGCTTCTT
CTGGTGATACTCGTTCCTTTGCGGAAGAGATTTTTGCTAGAGTTCCTCATCAAACTGCTTCTGTGAATCTTTACCAACAA
CGGGAAGCAGAGGCAGCAATGCTAGTGAGGAAGCAACAAACATATGCTCTTATAGATGATGACGATGATGATGAAGACGA
AGTGGTTAAGGAGAAAAAACCTTCAGCTTCTGAATCTAAAAAGTCAGATAAGGGCAAGAAAAGGTTTAGAAAGAAAAGTG
GGCAGTCAGATGACAGTGATGAAGAGGTGCCTGTTAGAGAGGACAGTAGACACGTTCGAAGAAAGGTTTCTGAAGATGAG
GATGATGGTTCTGAGTCAGAAGAGGAAAGAGTGCGTGACCAAAAGGAGAAAGAAGAACTCGAGCAGCATATAAGAGATCG
TGATACTGCACGGACACGAAAGCTAACGGAGCAAAAGTTGTCAAAAAAAGAGCAAGAGGAGGCTCTTCGAAGAGCGAACG
CTTTGGAGGAGGATGATTTAAACTCTTTAAGGAAAGTTTCAAGACAAGAATATTTGAGGAAGAGGGAACAGAAGAAACTG
GAAGAACTAAGGGATGAGATAGAAGATGAACAATATCTTTTCGCAGATGAAAAGCTCACAGAAACAGAGCTTCGTGAGTA
TAGATACAAGAGAGAGCTTTATGATCTGGTGAAGAAAAGAACACAAGATGAAGATAACGTAGAGGAGTATAGAATTCCAG
ATGCTTATGATGATCAAGAGGGGGGTGTTGATCAGGAGAAGAGATTTGCTGTTGCTGTGCAACGATACAAGGACCTGGAT
TCAAGGGAGAAGATGGATCCATTTGCAGAGCAAGAAGCTTGGGAGGACCATCAGATTGGAAAAGCAAGACTAAAATTTGG
CTCAAAGAACAAAAAAGCCTCAGACGATTATCAGTTTGTGTTCGAGGACCAAATAAATTTTATAAAGGAATCTGTGATGG
CTGGTGAAAATTATGAAGATGGTATGCATCCTAAAGAGGCTCAAGATGCGGCTGAAAAAACAGCTTTAGAAGAACTTCAG
GAGGTCAGAAAAAGCCTGCCAATTTACGGGTATCGTGAGCAGTTGCTTCAGGCCGTGGAAGAGCATCAGGTTCTTGTCAT
TGTGGGAGACACTGGTTCAGGAAAGACAACACAAATACCACAATATCTCCACGAAGCTGGTTACACAAAGCGAGGAAAGG
TTGGTTGTACACAGCCCCGAAGAGTTGCAGCTATGAGTGTTGCTGCCCGTGTGGCTCAAGAGATGGGTGTCAAACTTGGA
CATGAGGTTGGCTATTCCATTCGATTTGAGGATTGTACTTCAGATAAAACTGTTCTGAAGTATATGACTGATGGAATGCT
TTTGCGTGAGCTGCTTGGGGAACCAGATCTGGCCAGCTACAGTGTCGTTATTGTAGACGAGGCGCACGAAAGAACCTTGT
CAACCGATATACTGTTTGGATTAGATATAGCGCGGTTTCGACCAGATTTGAAGTTGTTGATATCTAGTGCAACAATGGAT
GCCGAAAAGTTTTCTGATTATTTTGATACAGCGCCGATTTTTAGTTTCCCAGGGAGAAGGTATCCAGTTGAAATTAACTT
TACAAGTGCACCTGAAGCTGATTACATGGACGCAGCAATAGTTACTGTGCTTACTATCCATGTGAGGGAGCCGCTTGGAG
ATATATTGGTCTTCTTAACTGGTCAAGAGGAAATTGAAACCGCAGAAGAAATCTTGAAGCAAAGGATAAGAGGTTTGGGT
ACAAAGATCCGTGAATTAATCATATGCCCGATTTACGCAAACCTTCCAAGCGAACTCCAAGCAAAGATATTTGAGCCAAC
TCCAGAAGGGGCACGTAAAGTAGTCCTAGCGACAAACATTGCTGAAACATCATTGACGATTGATGGTATAAAGTATGTTG
TTGATCCTGGATTTAGCAAGATGAAATCATATAACCCGAGAACAGGGATGGAGTCTTTGCTGATTACTCCTATCTCCAAG
GCTTCAGCAACTCAACGTGCTGGACGAGCTGGAAGAACAAGCGCAGGGAAGTGTTACCGTCTGTACACAGCGTTTAATTA
CAACAACGACTTGGAGGAAAACACGGTGCCAGAAGTACAGAGGACGAATCTTGCAAGTGTGGTACTTGCTTTAAAGAGTC
TTGGAATTCATGATCTCATAAACTTTGATTTCATGGACCCTCCACCTGCTGAAGCACTTGTGAAGGCTTTAGAACTTCTC
TTCGCTCTAGGTGCTCTAAATAAGCTCGGTGAATTGACTAAAGCCGGTAGAAGGATGGCAGAGTTTCCCCTTGATCCGAT
GTTATCGAAGATGATTGTTGTTTCGGACAAGTACAAGTGCTCAGATGAGATAATATCAATTGCTGCTATGTTGTCCGTTG
GAGGGTCTATCTTCTACCGTCCCAAGGACAAACAGGTTCACGCTGACAATGCACGAATGAATTTTCACACTGGAAATATC
GGTGATCATATTGCTTTGCTAAAGGTTTACAGCTCATGGAAGGAAACAAACTACTCCACACAGTGGTGCTATGAGAACTA
CATTCAGGTACGGAGCATGAAAAGAGCCAGAGATATCCGTGACCAGTTGGAAGGACTTCTCGAGAGAGTGGAAATAGAAA
TCAGCTCAAACATGAACGAATTGGATTCAGTTAGAAAGTCCATTGTAGCTGGCTTTTTCCCGCACACTGCGAAGCTGCAG
AAGAATGGATCATATCGAACTGTGAAGCATCCCCAGACAGTGCACATACATCCCAATTCAGGCTTATCTCAGGTGTTGCC
AAGATGGGTTGTATATCATGAACTAGTGCTCACCTCCAAGGAATATATGCGACAGGTAACGGAGTTGAAACCAGAGTGGT
TGATTGAGTTAGCTCCTCACTACTACCAGCGCAAGGACGTTGAAGATGATGCATCAAAGAAAATGCCCAAAGGAGCTGGT
AAAGCTGCGATCTAA

Species Parental gene accession Homology type Retrogenes number
Oryza sativa indica BGIOSGA027162 ortholog_many2many 1 retrogene
retro_oind_65,
Brassica rapa Bra010168 ortholog_one2one 1 retrogene
retro_brap_26,
Brachypodium distachyon BRADI1G61220 ortholog_many2many 1 retrogene
retro_bdis_4,
Glycine max GLYMA06G21821 ortholog_one2many 1 retrogene
retro_gmax_7,
Leersia perrieri LPERR08G09260 ortholog_many2many 1 retrogene
retro_lper_14,
Hordeum vulgare MLOC_5589 ortholog_many2many 1 retrogene
retro_hvul_14,
Oryza meridionalis OMERI08G09070 ortholog_many2many 1 retrogene
retro_omer_5,
Oryza nivara ONIVA08G11780 ortholog_many2many 1 retrogene
retro_oniv_26,
Oryza punctata OPUNC08G10350 ortholog_many2many 1 retrogene
retro_opun_23,
Oryza glaberrima ORGLA08G0098600 ortholog_many2many 1 retrogene
retro_ogla_26,
Oryza rufipogon ORUFI08G12410 ortholog_many2many 1 retrogene
retro_oruf_44,
Prunus persica PRUPE_ppa000714mg ortholog_one2many 1 retrogene
retro_pper_32,
Sorghum bicolor Sb04g022460 ortholog_many2many 1 retrogene
retro_sbic_37,
Setaria italica Si021302m.g ortholog_many2many 1 retrogene
retro_sita_41,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_bole_7 72.01 60.54
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Download FASTA sequences of all Bo5g087070 retrocopies