RetrogeneDB ID: | retro_fcat_1317 | ||
Retrocopy location | Organism: | Cat (Felis catus) | |
| Coordinates: | C2:2716843..2717127(-) | ||
| Located in intron of: | ENSFCAG00000031343 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSFCAG00000002277 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_fcat_1317
CCGGGAGACCCGAGCAAGTGGCCTGGGACTCTGAGCCTGCAGGAAGCAGACAGGCAGCTGCAGAATCCCACTGAAGGTCA
AATACGCTGGGGCAGAGGTCAATGAGGTGGACAAAGGGGGACGCCCACCCAGGTAAGGAACTGGCCCACCAGGATCTCAT
GGGAGGCCCCCATCCAGGCAAACGCTGCCCCTTGGTCATGACAGACCCAGACGCTCCCAGCAGGAAGGACCCCAAATACA
GGGAATGGCACCATTTTCTGGTGGTCAACATGAAGGGCAATGAC
ORF - retro_fcat_1317 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 70.41 % |
| Parental protein coverage: | 50.8 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 3 |
Retrocopy - Parental Gene Alignment:
| Parental | PVDLSKWSGPLSLQEVDERPQHP-LQVKYTGAEVDEL-GKVLTPTQVKNRPTSIAWD-GLDPGKLYTLVM |
| P.D.SKW.G.LSLQE.D...Q.P.L.VKY.GAEV.E..G...TPTQV.N.PT.I.W..G..PGK...LVM | |
| Retrocopy | PGDPSKWPGTLSLQEADRQLQNP>LKVKYAGAEVNEV<GQRGTPTQVRNWPTRISWE<GPHPGKRCPLVM |
| Parental | TDPDAPSRKDPKYREWHHFLVVNMKGND |
| TDPDAPSRKDPKYREWHHFLVVNMKGND | |
| Retrocopy | TDPDAPSRKDPKYREWHHFLVVNMKGND |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP017611_brain | 0 .00 RPM | 289 .46 RPM |
| SRP017611_kidney | 0 .00 RPM | 418 .72 RPM |
| SRP017611_liver | 0 .00 RPM | 101 .39 RPM |
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_1317 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_1317 was not experimentally validated.