Parental gene:

Pebp1, ENSRNOG00000001136

Aliases:Pebp1, HCNP, Pbp, Rkip
Description:Phosphatidylethanolamine-binding protein 1 Hippocampal cholinergic neurostimulating peptide [Source:UniProtKB/Swiss-Prot;Acc:P31044]
Organism:Rat (Rattus norvegicus)
Coordinates:12:46846900..46851098(+)


>ENSRNOG00000001136
ATGGCCGCCGACATCAGCCAGTGGGCCGGGCCGCTGTCACTACAGGAGGTGGATGAGCCGCCCCAGCACGCCCTGAGGGT
CGACTACGGCGGAGTAACGGTGGACGAGCTGGGCAAAGTGCTGACGCCCACCCAGGTCATGAATAGACCAAGCAGCATTT
CATGGGATGGCCTTGATCCTGGGAAGCTCTACACCCTGGTCCTCACAGACCCCGATGCTCCCAGCAGGAAGGACCCCAAA
TTCAGGGAGTGGCACCACTTCCTGGTGGTCAACATGAAGGGCAACGACATTAGCAGTGGCACTGTCCTCTCCGAATACGT
GGGCTCCGGACCTCCCAAAGACACAGGTCTGCACCGCTACGTCTGGCTGGTGTATGAGCAGGAGCAGCCTCTGAACTGTG
ACGAGCCCATCCTCAGCAACAAGTCTGGAGACAACCGCGGCAAGTTCAAGGTGGAGTCCTTCCGCAAGAAGTACCACCTG
GGAGCCCCGGTGGCCGGCACGTGCTTCCAGGCAGAGTGGGATGACTCTGTGCCCAAGCTGCATGATCAGCTGGCTGGGAA
GTAG

Library Parental gene expression (RPM)
SRP017611_brain 218 .35 RPM
SRP017611_kidney 275 .85 RPM
SRP017611_liver 184 .63 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016143 ortholog_one2many 2 retrogenes
retro_amel_1355, retro_amel_754,
Bos taurus ENSBTAG00000018115 ortholog_one2many 2 retrogenes
retro_btau_1183, retro_btau_705,
Canis familiaris ENSCAFG00000009910 ortholog_one2many 1 retrogene
retro_cfam_526,
Callithrix jacchus ENSCJAG00000009314 ortholog_one2many 2 retrogenes
retro_cjac_1410, retro_cjac_818,
Erinaceus europaeus ENSEEUG00000003689 ortholog_one2many 1 retrogene
retro_eeur_292,
Felis catus ENSFCAG00000002277 ortholog_many2many 3 retrogenes
retro_fcat_1317, retro_fcat_1360, retro_fcat_299,
Homo sapiens ENSG00000089220 ortholog_one2many 3 retrogenes
retro_hsap_1456, retro_hsap_2288, retro_hsap_492,
Gorilla gorilla ENSGGOG00000013281 ortholog_one2many 3 retrogenes
retro_ggor_1121, retro_ggor_1701, retro_ggor_461,
Myotis lucifugus ENSMLUG00000002259 ortholog_many2many 7 retrogenes
retro_mluc_103, retro_mluc_1612, retro_mluc_1742, retro_mluc_2357, retro_mluc_2373, retro_mluc_984, retro_mluc_998,
Macaca mulatta ENSMMUG00000005098 ortholog_many2many 4 retrogenes
retro_mmul_1621, retro_mmul_2272, retro_mmul_328, retro_mmul_442,
Mustela putorius furo ENSMPUG00000002861 ortholog_one2many 3 retrogenes
retro_mputfur_1228, retro_mputfur_1361, retro_mputfur_223,
Mus musculus ENSMUSG00000032959 ortholog_one2one 4 retrogenes
retro_mmus_138, retro_mmus_1857, retro_mmus_2314, retro_mmus_542,
Nomascus leucogenys ENSNLEG00000000322 ortholog_one2many 1 retrogene
retro_nleu_1966,
Oryctolagus cuniculus ENSOCUG00000008395 ortholog_one2many 2 retrogenes
retro_ocun_1329, retro_ocun_1900,
Otolemur garnettii ENSOGAG00000001740 ortholog_one2many 1 retrogene
retro_ogar_2750,
Pongo abelii ENSPPYG00000005011 ortholog_one2many 2 retrogenes
retro_pabe_1202, retro_pabe_241,
Pan troglodytes ENSPTRG00000005512 ortholog_one2many 3 retrogenes
retro_ptro_1621, retro_ptro_371, retro_ptro_992,
Ictidomys tridecemlineatus ENSSTOG00000004085 ortholog_one2many 2 retrogenes
retro_itri_1603, retro_itri_961,
Tupaia belangeri ENSTBEG00000000177 ortholog_one2many 2 retrogenes
retro_tbel_272, retro_tbel_2728,
Tursiops truncatus ENSTTRG00000000658 ortholog_one2many 1 retrogene
retro_ttru_1164,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_46 79.68 100.00
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2. retro_rnor_541 82.68 93.58
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3. retro_rnor_1223 84.76 56.15
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Download FASTA sequences of all ENSRNOG00000001136 retrocopies