Parental gene:

ENSSTOG00000003401

Aliases:None
Description:None
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393514.1:1831552..1835784(-)


>ENSSTOG00000003401
AGCGCAGTGATGTTTACCGGCAAAAAACGCGGACGCTGCGCCTCTATGAATTTGGTCCCTCTGGAGGCGCCGTCTGAGTG
CGTACCTCCTCCGCGTCATGTGACCAAGGCCTGTAACGGAGGACCGGCGCCGGGGTGGCTTTCGAGCGGGATGGAGGCGA
CTTTGGAGCAGCACTTGGAGGATACAATGAAGAATCCGTCCATTGTTGGAGTCCTGTGCACAGATTCACAAGGACTTAAT
CTGGGCTGTCGTGGGACTCTGTCAGATGAACATGCTGGGGTTATATTTGTTCTAGCCCAACAAGCAGCTAAGCTAACCTC
TGACCCCACTGATATTCCTGTGGTGTGCCTAGAATCAGATAATGGGAACATTATGATCCAAAAACATGATGGCATCACCG
TGGCAGTGCACAAAATGGCCTCTTGA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011504 ortholog_one2many 2 retrogenes
retro_amel_118, retro_amel_974,
Bos taurus ENSBTAG00000014970 ortholog_many2many 3 retrogenes
retro_btau_1505, retro_btau_1755, retro_btau_71,
Choloepus hoffmanni ENSCHOG00000013405 possible_ortholog 3 retrogenes
retro_chof_2428, retro_chof_76, retro_chof_910,
Callithrix jacchus ENSCJAG00000003438 ortholog_one2many 1 retrogene
retro_cjac_2918,
Dipodomys ordii ENSDORG00000005672 ortholog_one2many 3 retrogenes
retro_dord_147, retro_dord_642, retro_dord_775,
Equus caballus ENSECAG00000021821 ortholog_one2many 1 retrogene
retro_ecab_1026,
Felis catus ENSFCAG00000023792 possible_ortholog 5 retrogenes
retro_fcat_1718, retro_fcat_1853, retro_fcat_1887, retro_fcat_413, retro_fcat_478,
Homo sapiens ENSG00000134248 ortholog_one2many 1 retrogene
retro_hsap_162,
Gorilla gorilla ENSGGOG00000016522 ortholog_one2many 1 retrogene
retro_ggor_247,
Loxodonta africana ENSLAFG00000012907 possible_ortholog 5 retrogenes
retro_lafr_1057, retro_lafr_1061, retro_lafr_1062, retro_lafr_665, retro_lafr_950,
Microcebus murinus ENSMICG00000005264 ortholog_one2many 4 retrogenes
retro_mmur_1114, retro_mmur_152, retro_mmur_422, retro_mmur_454,
Myotis lucifugus ENSMLUG00000007198 ortholog_one2many 2 retrogenes
retro_mluc_512, retro_mluc_708,
Macaca mulatta ENSMMUG00000015023 ortholog_many2many 4 retrogenes
retro_mmul_164, retro_mmul_2452, retro_mmul_440, retro_mmul_499,
Mustela putorius furo ENSMPUG00000003833 ortholog_one2many 5 retrogenes
retro_mputfur_1013, retro_mputfur_1020, retro_mputfur_1187, retro_mputfur_1387, retro_mputfur_921,
Mus musculus ENSMUSG00000087260 ortholog_one2many 3 retrogenes
retro_mmus_1061, retro_mmus_1901, retro_mmus_3723,
Oryctolagus cuniculus ENSOCUG00000002449 ortholog_one2many 2 retrogenes
retro_ocun_1880, retro_ocun_356,
Otolemur garnettii ENSOGAG00000033478 ortholog_one2many 2 retrogenes
retro_ogar_1388, retro_ogar_3454,
Ochotona princeps ENSOPRG00000004283 ortholog_one2many 5 retrogenes
retro_opri_138, retro_opri_199, retro_opri_488, retro_opri_567, retro_opri_716,
Pan troglodytes ENSPTRG00000001078 ortholog_one2many 2 retrogenes
retro_ptro_155, retro_ptro_436,
Sus scrofa ENSSSCG00000006807 possible_ortholog 1 retrogene
retro_sscr_986,
Tupaia belangeri ENSTBEG00000009117 ortholog_one2many 5 retrogenes
retro_tbel_1220, retro_tbel_1427, retro_tbel_1756, retro_tbel_2289, retro_tbel_2329,
Tarsius syrichta ENSTSYG00000006011 ortholog_one2many 5 retrogenes
retro_tsyr_305, retro_tsyr_306, retro_tsyr_318, retro_tsyr_560, retro_tsyr_870,
Tursiops truncatus ENSTTRG00000001319 ortholog_one2many 1 retrogene
retro_ttru_602,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_86 94.51 64.54
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2. retro_itri_154 93.41 64.54
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3. retro_itri_198 64.71 71.63
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4. retro_itri_587 88.78 69.50
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5. retro_itri_1196 78.89 63.83
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Download FASTA sequences of all ENSSTOG00000003401 retrocopies