Parental gene:

CAPNS1, ENSSSCG00000030149

Aliases:None
Description:Sus scrofa calpain, small subunit 1 (CAPNS1), mRNA. [Source:RefSeq mRNA;Acc:NM_214318]
Organism:Pig (Sus scrofa)
Coordinates:6:40913604..40920797(+)


>ENSSSCG00000030149
ATGTTCCTGGTTAACTCGTTCCTGAAGGGTGGCGGCGGCGGCGGCGGGGGAGGCGGGGGCTTGGGCGGGGGCCTAGGGAA
TGTGCTCGGAGGCCTGATCAGCGGGGCCGGAGGCGGCGGTGGCGGCGGCGGTGGCGGAGGAGGCGGCGGCGGTGGTGGCG
GAACTGCCATGCGCATCCTGGGCGGGGTTATTAGCGCCATCAGTGAGGCGGCTGCGCAGTACAACCCCGAGCCCCCGCCC
CCTCGCACCCATTATTCCAACATTGAGGCCAATGAGAGTGAGGAGGTCCGGCAGTTTCGGAGGCTCTTTGCCCAGCTGGC
TGGAGATGACATGGAGGTCAGTGCCACGGAACTCATGAACATTCTCAACAAGGTCGTGACCCGACACCCTGATCTGAAGA
CTGATGGTTTTGGCATTGACACATGTCGAAGCATGGTGGCTGTGATGGATAGTGACACAACCGGCAAGCTGGGCTTCGAG
GAATTCAAGTACTTGTGGAACAACATCAAAAAGTGGCAGGCCATATACAAACAGTTCGATGTTGACCGTTCAGGGACCAT
TGGCAGCAGTGAACTCCCAGGGGCCTTTGAAGCCGCAGGATTCCACCTGAATGAGCATCTCTACAGCATGATCATCCGAC
GCTACTCAGATGAGGGAGGGAACATGGATTTTGACAACTTTATCAGCTGCCTGGTCAGACTGGATGCCATGTTCCGTGCC
TTCAAATCTCTTGACAAAGATGGTACTGGACAAATCCAGGTGAACATCCAGGAGTGGCTGCAGCTGACCATGTATTCCTG
A

Library Parental gene expression (RPM)
SRP014902_placenta 1102 .73 RPM
SRP014902_testis 267 .19 RPM
SRP018288_heart 97 .05 RPM
SRP018288_kidney 274 .73 RPM
SRP018288_liver 130 .81 RPM
SRP018288_lung 483 .98 RPM
SRP018856_adipose 665 .23 RPM
SRP035408_brain 108 .37 RPM
SRP035408_liver 66 .26 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000000511 ortholog_one2one 1 retrogene
retro_acar_205,
Ailuropoda melanoleuca ENSAMEG00000001024 ortholog_one2one 1 retrogene
retro_amel_136,
Bos taurus ENSBTAG00000014872 ortholog_one2one 2 retrogenes
retro_btau_1126, retro_btau_692,
Canis familiaris ENSCAFG00000031314 ortholog_one2one 1 retrogene
retro_cfam_942,
Callithrix jacchus ENSCJAG00000009594 ortholog_one2one 1 retrogene
retro_cjac_2940,
Cavia porcellus ENSCPOG00000000115 ortholog_one2one 1 retrogene
retro_cpor_1131,
Equus caballus ENSECAG00000012210 ortholog_one2one 1 retrogene
retro_ecab_707,
Echinops telfairi ENSETEG00000007650 ortholog_one2one 2 retrogenes
retro_etel_1190, retro_etel_60,
Felis catus ENSFCAG00000014149 ortholog_one2one 1 retrogene
retro_fcat_1691,
Homo sapiens ENSG00000126247 ortholog_one2one 1 retrogene
retro_hsap_98,
Gorilla gorilla ENSGGOG00000003699 ortholog_one2one 2 retrogenes
retro_ggor_1241, retro_ggor_263,
Microcebus murinus ENSMICG00000010255 ortholog_one2one 1 retrogene
retro_mmur_416,
Myotis lucifugus ENSMLUG00000024944 ortholog_one2one 1 retrogene
retro_mluc_2336,
Macaca mulatta ENSMMUG00000000249 ortholog_one2many 2 retrogenes
retro_mmul_1334, retro_mmul_1567,
Monodelphis domestica ENSMODG00000014179 ortholog_one2one 1 retrogene
retro_mdom_410,
Mustela putorius furo ENSMPUG00000005617 ortholog_one2one 1 retrogene
retro_mputfur_444,
Mus musculus ENSMUSG00000001794 ortholog_one2one 1 retrogene
retro_mmus_80,
Nomascus leucogenys ENSNLEG00000011712 ortholog_one2one 2 retrogenes
retro_nleu_1328, retro_nleu_992,
Ornithorhynchus anatinus ENSOANG00000002736 possible_ortholog 1 retrogene
retro_oana_113,
Oryctolagus cuniculus ENSOCUG00000013093 ortholog_one2one 1 retrogene
retro_ocun_1095,
Otolemur garnettii ENSOGAG00000006992 ortholog_one2one 1 retrogene
retro_ogar_1956,
Ochotona princeps ENSOPRG00000016562 ortholog_one2one 2 retrogenes
retro_opri_181, retro_opri_486,
Procavia capensis ENSPCAG00000006353 ortholog_one2one 1 retrogene
retro_pcap_165,
Pongo abelii ENSPPYG00000009898 ortholog_one2one 2 retrogenes
retro_pabe_1359, retro_pabe_448,
Pelodiscus sinensis ENSPSIG00000012793 ortholog_one2one 1 retrogene
retro_psin_45,
Pan troglodytes ENSPTRG00000010887 ortholog_one2one 2 retrogenes
retro_ptro_1112, retro_ptro_168,
Pteropus vampyrus ENSPVAG00000012885 ortholog_one2one 3 retrogenes
retro_pvam_1375, retro_pvam_639, retro_pvam_737,
Rattus norvegicus ENSRNOG00000045747 ortholog_one2many 2 retrogenes
retro_rnor_1447, retro_rnor_2145,
Sorex araneus ENSSARG00000004266 ortholog_one2one 1 retrogene
retro_sara_215,
Ictidomys tridecemlineatus ENSSTOG00000026235 ortholog_one2one 1 retrogene
retro_itri_342,
Vicugna pacos ENSVPAG00000008074 ortholog_one2one 1 retrogene
retro_vpac_64,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_73 69.17 89.85
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2. retro_sscr_495 75.00 53.76
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Download FASTA sequences of all ENSSSCG00000030149 retrocopies