Parental gene: | FAM136A, ENSSSCG00000026446 |
| Aliases: | None |
| Description: | family with sequence similarity 136, member A [Source:HGNC Symbol;Acc:25911] |
| Organism: | Pig (Sus scrofa) |
| Coordinates: | 3:75462087..75468524(+) |
>ENSSSCG00000026446
ATGGCGGAGCTGCAGCAGCTCCGGGTGCAGGAGGCAGTGGACTCCATGGTGAAGAATCTGGAGAGAGAGAACATCCGGAA
GATGCAGGGCCTCATGTTCCGGTGCAGTGCTGGCTGCTGTGAGGACAGCCAGGCATCCATGCAGCAGGTGCATCAGTGCA
TCGAGCGCTGCCATGCACCTCTGGCTCAAGCCCAGGCCCTGGTCACCAGTGAGTTGGAGAAGTTCCAGGACCGCCTGGCC
CGGTGCACTTTGCACTGCAACGACAAAGCCAAAGATTCAATAGACGCAGGGAGTAAGGAGCTCCAGGTGAAGCGGCAGCT
GGAGTGTTGTGTGACCAAGTGTGTGGATGACCACATGAACCTCATCCCAACCATGACCAAGAAGATGAAGGAGTCACTCT
CGTCCATGGGGAAATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP014902_placenta | 11 .55 RPM |
| SRP014902_testis | 45 .97 RPM |
| SRP018288_heart | 25 .17 RPM |
| SRP018288_kidney | 43 .15 RPM |
| SRP018288_liver | 37 .90 RPM |
| SRP018288_lung | 21 .69 RPM |
| SRP018856_adipose | 24 .17 RPM |
| SRP035408_brain | 31 .82 RPM |
| SRP035408_liver | 58 .65 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000015992 | ortholog_one2one | 1 retrogene | |
| Bos taurus | ENSBTAG00000008674 | ortholog_one2many | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000003353 | ortholog_one2many | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000009117 | ortholog_one2many | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000019447 | ortholog_one2one | 7 retrogenes | |
| Dipodomys ordii | ENSDORG00000006529 | ortholog_one2one | 4 retrogenes | |
| Felis catus | ENSFCAG00000008119 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000035141 | ortholog_one2one | 5 retrogenes | |
| Gorilla gorilla | ENSGGOG00000023247 | ortholog_one2many | 6 retrogenes | |
| Macropus eugenii | ENSMEUG00000015791 | ortholog_one2one | 8 retrogenes | |
| Macaca mulatta | ENSMMUG00000007962 | ortholog_one2many | 5 retrogenes | |
| Monodelphis domestica | ENSMODG00000011533 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000057497 | ortholog_one2many | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000028265 | ortholog_one2one | 4 retrogenes | |
| Pongo abelii | ENSPPYG00000012323 | ortholog_one2one | 6 retrogenes | |
| Pan troglodytes | ENSPTRG00000012030 | ortholog_one2one | 6 retrogenes | |
| Rattus norvegicus | ENSRNOG00000016273 | ortholog_one2many | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000008343 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000017418 | ortholog_one2one | 8 retrogenes | |
| Tursiops truncatus | ENSTTRG00000001198 | ortholog_one2one | 5 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_sscr_229 | 82.50 | 86.96 | Please wait, loading  |
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| 2. | retro_sscr_230 | 82.50 | 86.96 | Please wait, loading |
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| 3. | retro_sscr_309 | 81.62 | 98.55 | Please wait, loading |
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| 4. | retro_sscr_335 | 84.29 | 100.00 | Please wait, loading |
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| 5. | retro_sscr_914 | 75.00 | 97.83 | Please wait, loading |
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| 6. | retro_sscr_1075 | 78.99 | 100.00 | Please wait, loading |
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Download FASTA sequences of all ENSSSCG00000026446 retrocopies