Parental gene:

MRPS15, ENSSSCG00000026393

Aliases:None
Description:mitochondrial ribosomal protein S15 [Source:HGNC Symbol;Acc:14504]
Organism:Pig (Sus scrofa)
Coordinates:GL895950.1:18101..24790(-)


>ENSSSCG00000026393
GCCCTCAAGATAATCGGAGCCGAGNTGAGTTCGATTAGGACCCAGGCAGTGACCCAGGCCCCAGTCCTCGGGCTTCCGGG
CGGAGGGTGCGCCAGGTTTCCCTCTGTCCAGCGGGCCCTTCCCTCACGTCCTGCAGGTCTCATTCTCCGGGCCGCCCGTG
GATATGCCGCCCAAAAGCCAGTCCAGCCCAACCAAGATGACCCGCCTCCTTCCATGCTGCTCCTGGACTACCAGAACGTG
CCTGGAATTCATAAGGTTGATGATGTTGTGAAAAGACTCTTATCTTTGGAAATGGCCAACCAGAAGGAGAAGCTAAAAAT
CAAGAAGATGCAGTTGATGAACAAGGTCCTAGAAAACCCTGAGGACACCAGCTCCCTGGAGGCTCGAATTGTTGCCTTGA
CTGTCAAGATCCGCAATTATGAAGAACACATGCAGAAACATCGAAAGGACAAAGCCCACAAACGCTTTCTGCTAATGAGC
ATTGACCAAAGGAAAAAGATGCTCAAAAACCTCCGCGAGACCAACTATGCCGTCTTTGAGAAGATATGCAAGGAGCTAGG
GATTGAGTACACCTTTCCCCCTCCGTACCACCGAAAAGCCCACCGCCGCTGGGTGACCAAGAAGGCTCTGTGCACCCAGG
TTTTCCGAGAGGTTCAAAAGCTAAAGAAGCAAAAAAGAGCCTTAAGAGCTGCAGCTGTAGCAGCCCACAAACAAGAGAGC
CCTTCCAAAGCTGGACCAGAGGCAATCAAAGGAAACCAATAA

Library Parental gene expression (RPM)
SRP014902_placenta 6 .50 RPM
SRP014902_testis 26 .45 RPM
SRP018288_heart 37 .59 RPM
SRP018288_kidney 33 .69 RPM
SRP018288_liver 30 .06 RPM
SRP018288_lung 23 .11 RPM
SRP018856_adipose 39 .35 RPM
SRP035408_brain 53 .83 RPM
SRP035408_liver 49 .64 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001463 ortholog_one2many 1 retrogene
retro_amel_1564,
Canis familiaris ENSCAFG00000030390 ortholog_one2one 1 retrogene
retro_cfam_1939,
Callithrix jacchus ENSCJAG00000001852 ortholog_one2one 3 retrogenes
retro_cjac_3095, retro_cjac_761, retro_cjac_859,
Cavia porcellus ENSCPOG00000010877 ortholog_one2one 1 retrogene
retro_cpor_430,
Dipodomys ordii ENSDORG00000007581 ortholog_one2one 1 retrogene
retro_dord_118,
Felis catus ENSFCAG00000005265 ortholog_one2many 1 retrogene
retro_fcat_915,
Homo sapiens ENSG00000116898 ortholog_one2one 1 retrogene
retro_hsap_1594,
Myotis lucifugus ENSMLUG00000006475 ortholog_one2one 1 retrogene
retro_mluc_1945,
Monodelphis domestica ENSMODG00000017813 ortholog_one2one 1 retrogene
retro_mdom_1094,
Mus musculus ENSMUSG00000028861 ortholog_one2one 1 retrogene
retro_mmus_3447,
Nomascus leucogenys ENSNLEG00000011467 ortholog_one2one 1 retrogene
retro_nleu_615,
Otolemur garnettii ENSOGAG00000002656 ortholog_one2many 2 retrogenes
retro_ogar_1327, retro_ogar_16,
Pongo abelii ENSPPYG00000001537 ortholog_one2one 1 retrogene
retro_pabe_1310,
Pan troglodytes ENSPTRG00000000541 ortholog_one2one 1 retrogene
retro_ptro_1071,
Ictidomys tridecemlineatus ENSSTOG00000000608 ortholog_one2one 1 retrogene
retro_itri_454,
Tupaia belangeri ENSTBEG00000000958 ortholog_one2one 4 retrogenes
retro_tbel_1633, retro_tbel_4438, retro_tbel_845, retro_tbel_882,
Tarsius syrichta ENSTSYG00000008948 ortholog_one2one 2 retrogenes
retro_tsyr_1612, retro_tsyr_372,
Tursiops truncatus ENSTTRG00000002345 ortholog_one2one 1 retrogene
retro_ttru_1500,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_1190 72.97 57.71
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSSSCG00000026393 retrocopies