Parental gene:

MRPS15, ENSCJAG00000001852

Aliases:None
Description:mitochondrial ribosomal protein S15 [Source:HGNC Symbol;Acc:14504]
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:70818598..70827257(-)


>ENSCJAG00000001852
ATGCTAAGGGCCGCGTGGAGGATGCTGAGTTTGATTCGGACCCAGGCAGTCACCCAGGCCCCAGGCCCCGGGCTGCCGAG
CTGTGGGAGCGCCAGATTTCCTTCCAACCAGTGGGGCCTGCAGCCTCGAAGTCTCCTCCAGGCCACGCGCAGATATGTCA
TCCAGAAACCAGTCCTGCCCAGGCAAGATGATGACCCGCCTCCTTCTACGCTGCTTCAAGACTACCAGAATGTCCCTGGA
ATTGAGAAGGTTGATGATGTTGTGAAAAGACTCTTGTCTTTGGAAATGGCCAAAAAGAAGGAGAAGCTAAAAGTCATACA
AGAACAGTTGATGAAAAAGATTGTTGAAAACCCTGAGGACACCAGATCTCTGGAGGCTCGAATTGTTGCCTTGACCATCA
AGATCCGCAGTTATGAAGAACACATGCAGAAACATCGAAAGGACAAAGCCCACAAACGCTATCTGCTGATGAGCATCGAC
CAGAGGAAAAAGATGCTCAAAAACCTCCGTAACACCAACTATGATGTCTATGAGAAGGTATGCAAGGAGCTGGGGATTGA
GTACACCTTCCCACCTCTATATTACCGAAGAGCCCACCGCCGATTCGTGACCAAGAAGGCTCTGTGCATTCGGGTTTTCC
AGGAGACTCAAAAGCTGAAGAAGCAAAAAAGAGCTTTAAAGGCTGCAGCAGCAGCCCAAAAACAAGCAAAGCAAAGGAAA
CCAGACAGCCCTGCCAAAGCCGAACCAGAGATACTCGGAGACAACCAATAA

Library Parental gene expression (RPM)
SRP051959_colon 3 .62 RPM
SRP051959_heart 7 .33 RPM
SRP051959_kidney 6 .68 RPM
SRP051959_liver 5 .63 RPM
SRP051959_lung 5 .32 RPM
SRP051959_lymph_node 4 .89 RPM
SRP051959_skeletal_muscle 14 .70 RPM
SRP051959_spleen 7 .65 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001463 ortholog_one2many 1 retrogene
retro_amel_1564,
Canis familiaris ENSCAFG00000030390 ortholog_one2one 1 retrogene
retro_cfam_1939,
Cavia porcellus ENSCPOG00000010877 ortholog_one2one 1 retrogene
retro_cpor_430,
Dipodomys ordii ENSDORG00000007581 ortholog_one2one 1 retrogene
retro_dord_118,
Felis catus ENSFCAG00000005265 ortholog_one2many 1 retrogene
retro_fcat_915,
Homo sapiens ENSG00000116898 ortholog_one2one 1 retrogene
retro_hsap_1594,
Myotis lucifugus ENSMLUG00000006475 ortholog_one2one 1 retrogene
retro_mluc_1945,
Monodelphis domestica ENSMODG00000017813 ortholog_one2one 1 retrogene
retro_mdom_1094,
Mus musculus ENSMUSG00000028861 ortholog_one2one 1 retrogene
retro_mmus_3447,
Nomascus leucogenys ENSNLEG00000011467 ortholog_one2one 1 retrogene
retro_nleu_615,
Otolemur garnettii ENSOGAG00000002656 ortholog_one2many 2 retrogenes
retro_ogar_1327, retro_ogar_16,
Pongo abelii ENSPPYG00000001537 ortholog_one2one 1 retrogene
retro_pabe_1310,
Pan troglodytes ENSPTRG00000000541 ortholog_one2one 1 retrogene
retro_ptro_1071,
Sus scrofa ENSSSCG00000026393 ortholog_one2one 1 retrogene
retro_sscr_1190,
Ictidomys tridecemlineatus ENSSTOG00000000608 ortholog_one2one 1 retrogene
retro_itri_454,
Tupaia belangeri ENSTBEG00000000958 ortholog_one2one 4 retrogenes
retro_tbel_1633, retro_tbel_4438, retro_tbel_845, retro_tbel_882,
Tarsius syrichta ENSTSYG00000008948 ortholog_one2one 2 retrogenes
retro_tsyr_1612, retro_tsyr_372,
Tursiops truncatus ENSTTRG00000002345 ortholog_one2one 1 retrogene
retro_ttru_1500,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_761 55.80 69.53
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2. retro_cjac_859 97.28 100.00
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3. retro_cjac_3095 80.43 71.48
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Download FASTA sequences of all ENSCJAG00000001852 retrocopies