Parental gene:

ENSSSCG00000025928

Aliases:None
Description:60S ribosomal protein L18 [Source:UniProtKB/TrEMBL;Acc:I3L6F1]
Organism:Pig (Sus scrofa)
Coordinates:6:49721683..49725897(-)


>ENSSSCG00000025928
ATGGGAGTTGACATCCGCCACAACAAGGACCGAAAGGTTCGACGCAAGGAGCCCAAGAGCCAGGACATCTACCTGAGGCT
GCTGGTCAAGCTGTACAGGTTTCTGGCCAGACGAACCAACTCCACCTTCAATCAAGTTGTGCTGAAGAGGTTGTTCATGA
GTCGCACCAACCGGCCACCCCTGTCGCTTTCCCGGATGATCCGGAAGATGAAGCTTCCTGGCCGGGAAGGCAAGACCGCT
GTGGTCGTAGGGACTATAACCGATGACGTGCGTGTCCAGGAGGTGCCCAAATTGAAGGTGTGCGCTCTGCGCGTGAGCAG
CCGTGCCCGGAGCCGCATTCTCAAGGCCGGGGGCAAAATCCTCACCTTCGACCAGTTGGCCCTGGACTCCCCCAAAGGCT
GTGGCACTGTCCTCCTCTCTGGGCCTCGCAAGGGCCGCGAGGTGTACAGGCATTTCGGCAAGGCCCCAGGGACCCCGCAC
AGCCACACCAAACCCTATGTTCGCTCCAAGGGCCGGAAGTTCGAGCGCGCCAGAGGCCGACGTGCCAGCCGCGGCTACAA
AAACTAA

Library Parental gene expression (RPM)
SRP014902_placenta 115 .87 RPM
SRP014902_testis 315 .99 RPM
SRP018288_heart 58 .83 RPM
SRP018288_kidney 114 .66 RPM
SRP018288_liver 86 .51 RPM
SRP018288_lung 205 .69 RPM
SRP018856_adipose 88 .10 RPM
SRP035408_brain 168 .33 RPM
SRP035408_liver 119 .92 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014872 ortholog_one2one 3 retrogenes
Bos taurus ENSBTAG00000015388 ortholog_one2one 1 retrogene
Canis familiaris ENSCAFG00000003967 ortholog_one2one 7 retrogenes
Choloepus hoffmanni ENSCHOG00000009140 ortholog_one2many 6 retrogenes
Callithrix jacchus ENSCJAG00000000377 possible_ortholog 4 retrogenes
Cavia porcellus ENSCPOG00000026334 possible_ortholog 4 retrogenes
Equus caballus ENSECAG00000021927 ortholog_one2one 3 retrogenes
Erinaceus europaeus ENSEEUG00000015872 ortholog_one2one 5 retrogenes
Echinops telfairi ENSETEG00000013157 ortholog_one2one 6 retrogenes
Felis catus ENSFCAG00000008652 ortholog_one2one 4 retrogenes
Homo sapiens ENSG00000063177 possible_ortholog 11 retrogenes
Gorilla gorilla ENSGGOG00000024878 possible_ortholog 7 retrogenes
Loxodonta africana ENSLAFG00000031267 ortholog_one2one 1 retrogene
Macropus eugenii ENSMEUG00000000640 ortholog_one2many 1 retrogene
Myotis lucifugus ENSMLUG00000009286 ortholog_one2one 12 retrogenes
Macaca mulatta ENSMMUG00000022158 possible_ortholog 3 retrogenes
Monodelphis domestica ENSMODG00000014099 ortholog_many2many 1 retrogene
Mustela putorius furo ENSMPUG00000003891 ortholog_one2many 4 retrogenes
Mus musculus ENSMUSG00000059070 possible_ortholog 11 retrogenes
Nomascus leucogenys ENSNLEG00000004537 ortholog_one2one 11 retrogenes
Otolemur garnettii ENSOGAG00000003562 possible_ortholog 16 retrogenes
Oreochromis niloticus ENSONIG00000006539 ortholog_one2many 1 retrogene
Pongo abelii ENSPPYG00000010206 ortholog_one2one 6 retrogenes
Pan troglodytes ENSPTRG00000011245 possible_ortholog 10 retrogenes
Pteropus vampyrus ENSPVAG00000009524 ortholog_one2one 10 retrogenes
Rattus norvegicus ENSRNOG00000021035 possible_ortholog 14 retrogenes
Sarcophilus harrisii ENSSHAG00000006564 ortholog_one2many 2 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000012258 possible_ortholog 5 retrogenes
Tupaia belangeri ENSTBEG00000001594 ortholog_one2one 18 retrogenes
Tursiops truncatus ENSTTRG00000008187 ortholog_one2one 3 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_118 76.12 70.74
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2. retro_sscr_836 61.86 50.53
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3. retro_sscr_864 61.86 50.53
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4. retro_sscr_925 58.59 51.60
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5. retro_sscr_1028 68.97 61.70
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Download FASTA sequences of all ENSSSCG00000025928 retrocopies