Parental gene:

RPL18, ENSEEUG00000015872

Aliases:None
Description:ribosomal protein L18 [Source:HGNC Symbol;Acc:10310]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_517:19452..24084(-)


>ENSEEUG00000015872
ATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCAGGACATCTACCTTAGGCT
GCTGGTCAAGCTCTACAGGTTCCTGGCCAGGCGGACCAACTCCACCTTCAACCAGGTTGTGCTGAAGAGGTTGTTCATGA
GTCGGACCAACCGGCCGCCCCTGTCCCTCTCCCGGATGATCCGGAAGATGAAGCTTCCCGGCCGGGAAGGCAAAACAGCC
GTGGTGGTCGGGACTATCACTGACGACGTGCGTGTCCAGGAGGTGCCCAAGCTGAAGGTATGTGCCCTGCGTGTGACCAC
CCGTGCCCGGAGCCGCATCCTCAAGGCCGGGGGCAAGATCCTTACGTTTGACCAGCTGGCCCTGGACTCCCCCAAGGGCT
GTGGCACCGTCCTGCTCTCTGGACCTCGTAAGGGCAGAGAGGTGTACAGGCATTTCGGCAAGGCCCCAGGCACCCCGCAC
AGCCACACCAAGCCTTACGTCCGCTCCAAGGGCCGGAAGTTTGAGAGAGCCAGAGGCCGAAGGGCCAGCCGTGGCTACAA
AAACTAA

Library Parental gene expression (RPM)
SRP017611_brain 71 .39 RPM
SRP017611_kidney 222 .61 RPM
SRP017611_liver 163 .99 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014872 ortholog_one2one 3 retrogenes
retro_amel_1718, retro_amel_640, retro_amel_740,
Bos taurus ENSBTAG00000015388 ortholog_one2one 1 retrogene
retro_btau_845,
Canis familiaris ENSCAFG00000003967 ortholog_one2one 7 retrogenes
retro_cfam_1285, retro_cfam_1383, retro_cfam_1507, retro_cfam_1853, retro_cfam_2044, retro_cfam_2199, retro_cfam_304,
Choloepus hoffmanni ENSCHOG00000009140 ortholog_one2one 6 retrogenes
retro_chof_1408, retro_chof_1668, retro_chof_1697, retro_chof_2025, retro_chof_427, retro_chof_436,
Equus caballus ENSECAG00000021927 ortholog_one2one 3 retrogenes
retro_ecab_478, retro_ecab_530, retro_ecab_880,
Echinops telfairi ENSETEG00000013157 ortholog_one2one 6 retrogenes
retro_etel_1059, retro_etel_1211, retro_etel_1342, retro_etel_1373, retro_etel_1391, retro_etel_1715,
Felis catus ENSFCAG00000008652 ortholog_one2one 4 retrogenes
retro_fcat_1055, retro_fcat_1268, retro_fcat_1596, retro_fcat_718,
Gorilla gorilla ENSGGOG00000024878 possible_ortholog 7 retrogenes
retro_ggor_1038, retro_ggor_1280, retro_ggor_2200, retro_ggor_2550, retro_ggor_2624, retro_ggor_847, retro_ggor_937,
Loxodonta africana ENSLAFG00000031267 ortholog_one2one 1 retrogene
retro_lafr_879,
Macropus eugenii ENSMEUG00000000640 ortholog_one2one 1 retrogene
retro_meug_1568,
Myotis lucifugus ENSMLUG00000009286 ortholog_one2one 12 retrogenes
retro_mluc_1440, retro_mluc_1442, retro_mluc_1462, retro_mluc_1736, retro_mluc_1791, retro_mluc_1912, retro_mluc_2023, retro_mluc_480, retro_mluc_729, retro_mluc_786, retro_mluc_886, retro_mluc_904,
Macaca mulatta ENSMMUG00000022158 possible_ortholog 3 retrogenes
retro_mmul_32, retro_mmul_55, retro_mmul_92,
Monodelphis domestica ENSMODG00000014099 ortholog_one2many 1 retrogene
retro_mdom_906,
Mustela putorius furo ENSMPUG00000003891 ortholog_one2many 4 retrogenes
retro_mputfur_135, retro_mputfur_1410, retro_mputfur_529, retro_mputfur_974,
Nomascus leucogenys ENSNLEG00000004537 ortholog_one2one 11 retrogenes
retro_nleu_1124, retro_nleu_1136, retro_nleu_1410, retro_nleu_1799, retro_nleu_2006, retro_nleu_2380, retro_nleu_2464, retro_nleu_2597, retro_nleu_547, retro_nleu_577, retro_nleu_976,
Otolemur garnettii ENSOGAG00000003562 possible_ortholog 16 retrogenes
retro_ogar_1167, retro_ogar_1474, retro_ogar_1563, retro_ogar_1753, retro_ogar_1978, retro_ogar_2394, retro_ogar_2419, retro_ogar_2527, retro_ogar_2613, retro_ogar_2833, retro_ogar_3319, retro_ogar_3456, retro_ogar_3458, retro_ogar_3459, retro_ogar_492, retro_ogar_996,
Oreochromis niloticus ENSONIG00000006539 ortholog_one2one 1 retrogene
retro_onil_43,
Pongo abelii ENSPPYG00000010206 ortholog_one2one 6 retrogenes
retro_pabe_1003, retro_pabe_1337, retro_pabe_1402, retro_pabe_2681, retro_pabe_3100, retro_pabe_3176,
Pteropus vampyrus ENSPVAG00000009524 ortholog_one2one 10 retrogenes
retro_pvam_101, retro_pvam_1034, retro_pvam_1244, retro_pvam_1376, retro_pvam_1444, retro_pvam_427, retro_pvam_785, retro_pvam_883, retro_pvam_969, retro_pvam_990,
Rattus norvegicus ENSRNOG00000021035 possible_ortholog 14 retrogenes
retro_rnor_1068, retro_rnor_1072, retro_rnor_1154, retro_rnor_1186, retro_rnor_1337, retro_rnor_1359, retro_rnor_2174, retro_rnor_2224, retro_rnor_2847, retro_rnor_2890, retro_rnor_516, retro_rnor_685, retro_rnor_856, retro_rnor_857,
Sarcophilus harrisii ENSSHAG00000006564 ortholog_one2one 2 retrogenes
retro_shar_571, retro_shar_659,
Sus scrofa ENSSSCG00000025928 ortholog_one2one 5 retrogenes
retro_sscr_1028, retro_sscr_118, retro_sscr_836, retro_sscr_864, retro_sscr_925,
Ictidomys tridecemlineatus ENSSTOG00000012258 possible_ortholog 5 retrogenes
retro_itri_261, retro_itri_323, retro_itri_828, retro_itri_853, retro_itri_957,
Tupaia belangeri ENSTBEG00000001594 ortholog_one2one 18 retrogenes
retro_tbel_1006, retro_tbel_126, retro_tbel_1591, retro_tbel_1599, retro_tbel_1600, retro_tbel_1719, retro_tbel_2618, retro_tbel_2628, retro_tbel_277, retro_tbel_2984, retro_tbel_3527, retro_tbel_3529, retro_tbel_3608, retro_tbel_3609, retro_tbel_4409, retro_tbel_4473, retro_tbel_4590, retro_tbel_737,
Tursiops truncatus ENSTTRG00000008187 ortholog_one2one 3 retrogenes
retro_ttru_1127, retro_ttru_1770, retro_ttru_42,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_176 84.69 52.13
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2. retro_eeur_299 92.67 78.72
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3. retro_eeur_381 83.67 78.19
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4. retro_eeur_419 53.54 52.13
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5. retro_eeur_437 85.59 59.04
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Download FASTA sequences of all ENSEEUG00000015872 retrocopies