Parental gene:

PSME3, ENSSSCG00000017385

Aliases:None
Description:Sus scrofa proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) (PSME3), mRNA. [Source:RefSeq mRNA;Acc:NM_214348]
Organism:Pig (Sus scrofa)
Coordinates:12:20244727..20250334(-)


>ENSSSCG00000017385
ATGGCCTCGTTGCTGAAGGTGGATCAGGAAGTAAAGCTCAAGGTTGATTCTTTCAGGGAGCGGATTACAAGTGAGGCAGA
AGACTTGGTGGCAAATTTTTTCCCAAAGAAATTGTTAGAACTTGATAGTTTTTTGAAGGAGCCAATCCTAAACATCCATG
ACCTAACTCAGATCCACTCAGACATGAATCTCCCAGTCCCTGACCCCATTCTTCTCACCAATAGCCATGATGGACTGGAC
GGTCCCACTTATAAGAAGCGAAGGTTGGATGAATGTGAAGAGGCCTTCCAAGGAACCAAGGTGTTTGTGATGCCCAATGG
GATGCTAAAAAGCAACCAGCAGCTGGTGGACATTATTGAGAAAGTGAAGCCTGAGATTCGGCTGCTGATCGAGAAATGCA
ACACGGTCAAAATGTGGGTACAACTCCTGATTCCTAGGATAGAAGATGGGAACAACTTTGGGGTGTCCATTCAGGAAGAG
ACAGTTGCAGAATTAAGAACTGTTGAGAGTGAAGCAGCCTCTTATCTGGACCAGATTTCTAGATATTATATTACAAGAGC
CAAATTGGTTTCTAAAATAGCTAAATACCCCCATGTGGAGGACTATCGGCGCACCGTGACAGAGATTGATGAGAAAGAAT
ATATCAGCCTTCGGCTCATCATATCAGAGCTAAGGAATCAGTATGTCACTCTACATGACATGATCCTGAAAAACATCGAG
AAGATCAAACGGCCCCGGAGCAGCAATGCAGAGACACTGTACTGA

Library Parental gene expression (RPM)
SRP014902_placenta 14 .73 RPM
SRP014902_testis 26 .03 RPM
SRP018288_heart 22 .71 RPM
SRP018288_kidney 37 .04 RPM
SRP018288_liver 29 .90 RPM
SRP018288_lung 42 .05 RPM
SRP018856_adipose 24 .50 RPM
SRP035408_brain 43 .51 RPM
SRP035408_liver 41 .01 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000013688 ortholog_one2many 2 retrogenes
retro_acar_118, retro_acar_37,
Bos taurus ENSBTAG00000019918 ortholog_one2one 2 retrogenes
retro_btau_1249, retro_btau_941,
Callithrix jacchus ENSCJAG00000013111 ortholog_one2one 1 retrogene
retro_cjac_2307,
Cavia porcellus ENSCPOG00000012552 ortholog_one2one 1 retrogene
retro_cpor_1204,
Equus caballus ENSECAG00000012620 ortholog_one2many 2 retrogenes
retro_ecab_29, retro_ecab_827,
Homo sapiens ENSG00000131467 ortholog_one2one 1 retrogene
retro_hsap_245,
Loxodonta africana ENSLAFG00000013446 ortholog_one2one 1 retrogene
retro_lafr_725,
Mustela putorius furo ENSMPUG00000010027 ortholog_one2one 1 retrogene
retro_mputfur_619,
Oryctolagus cuniculus ENSOCUG00000015986 ortholog_one2one 1 retrogene
retro_ocun_641,
Pongo abelii ENSPPYG00000008372 ortholog_one2one 1 retrogene
retro_pabe_413,
Pan troglodytes ENSPTRG00000009225 ortholog_one2one 1 retrogene
retro_ptro_212,
Sus scrofa ENSSSCG00000002004 within_species_paralog 1 retrogene
retro_sscr_302,
Ictidomys tridecemlineatus ENSSTOG00000028833 ortholog_one2one 1 retrogene
retro_itri_153,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_784 72.79 57.87
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Download FASTA sequences of all ENSSSCG00000017385 retrocopies