Parental gene:

PSME3, ENSPTRG00000009225

Aliases:None
Description:Pan troglodytes proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) (PSME3), mRNA. [Source:RefSeq mRNA;Acc:NM_001251895]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:17:14538145..14549692(-)


>ENSPTRG00000009225
ATGGCCTCGTTGCTGAAGGTGGATCAGGAAGTGAAGCTCAAGGTTGATTCTTTCAGGGAGCGGATCACAAGTGAGGCAGA
AGACTTGGTGGCAAATTTTTTCCCAAAGAAGTTGTTAGAACTTGATAGTTTTCTGAAGGAACCAATCTTAAACATCCATG
ACCTAACTCAGATCCACTCTGACATGAATCTCCCAGTCCCTGACCCCATTCTTCTCACCAATAGCCATGATGGACTGGAT
GGTCCCACTTATAAGAAGCGAAGGTTGGATGAGTGTGAAGAAGCCTTCCAAGGAACCAAGGTGTTTGTGATGCCCAATGG
GATGCTGAAAAGCAACCAGCAGCTGGTGGACATTATTGAGAAAGTGAAACCTGAGATCCGGCTGTTGATTGAGAAATGTA
ACACGGTCAAAATGTGGGTACAGCTCCTGATTCCCAGGATAGAAGATGGAAACAACTTTGGGGTGTCCATTCAGGAGGAA
ACAGTTGCAGAGCTAAGAACTGTTGAGAGTGAAGCTGCATCTTATCTGGACCAGATTTCTAGATATTATATTACAAGAGC
CAAATTGGTTTCTAAAATAGCTAAATATCCCCATGTGGAGGACTATCGCCGCACCGTGACAGAGATTGATGAGAAAGAAT
ATATCAGCCTTCGGCTCATCATATCAGAGCTGAGGAATCAATATGTCACTCTACATGACATGATCCTGAAAAATATCGAG
AAGATCAAACGGCCCCGGAGCAGCAATGCAGAGACTCTGTACTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 60 .34 RPM
SRP007412_cerebellum 67 .36 RPM
SRP007412_heart 36 .52 RPM
SRP007412_kidney 70 .22 RPM
SRP007412_liver 58 .69 RPM
SRP007412_testis 93 .16 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000013688 ortholog_one2many 2 retrogenes
retro_acar_118, retro_acar_37,
Bos taurus ENSBTAG00000019918 ortholog_one2one 2 retrogenes
retro_btau_1249, retro_btau_941,
Callithrix jacchus ENSCJAG00000013111 ortholog_one2one 1 retrogene
retro_cjac_2307,
Cavia porcellus ENSCPOG00000012552 ortholog_one2one 1 retrogene
retro_cpor_1204,
Equus caballus ENSECAG00000012620 ortholog_one2many 2 retrogenes
retro_ecab_29, retro_ecab_827,
Homo sapiens ENSG00000131467 ortholog_one2one 1 retrogene
retro_hsap_245,
Loxodonta africana ENSLAFG00000013446 ortholog_one2one 1 retrogene
retro_lafr_725,
Mustela putorius furo ENSMPUG00000010027 ortholog_one2one 1 retrogene
retro_mputfur_619,
Oryctolagus cuniculus ENSOCUG00000015986 ortholog_one2one 1 retrogene
retro_ocun_641,
Pongo abelii ENSPPYG00000008372 ortholog_one2one 1 retrogene
retro_pabe_413,
Pan troglodytes ENSPTRG00000006196 within_species_paralog 4 retrogenes
retro_ptro_2028, retro_ptro_2046, retro_ptro_2172, retro_ptro_820,
Sus scrofa ENSSSCG00000017385 ortholog_one2one 1 retrogene
retro_sscr_784,
Ictidomys tridecemlineatus ENSSTOG00000028833 ortholog_one2one 1 retrogene
retro_itri_153,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_212 64.63 57.87
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Download FASTA sequences of all ENSPTRG00000009225 retrocopies