Parental gene:

PSME3, ENSCJAG00000013111

Aliases:None
Description:proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) [Source:HGNC Symbol;Acc:9570]
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:75292865..75299625(+)


>ENSCJAG00000013111
ATGGCCTCGTTGCTGAAGGTGGATCAGGAAGTGAAGCTCAAGGTTGATTCTTTCAGGGAGCGGATCACAAGTGAGGCAGA
AGACTTGGTGGCAAATTTTTTCCCAAAGAAGTTATTAGAACTTGATAGTTTTCTGAAGGAACCAATCTTAAACATCCATG
ACCTAACTCAGATCCACTCTGACATGAATCTCCCAGTCCCTGACCCCATTCTTCTCACCAATAGCCATGATGGACTGGAT
GGTCCCACTTATAAGAAGCGAAGGTTGGATGAGTGTGAAGAAGCCTTCCAAGGAACCAAGGTGTTTGTCATGCCCAATGG
GATGCTGAAAAGCAACCAGCAGCTGGTGGACATTATCGAGAAAGTGAAACCTGAGATCCGGCTGCTGATTGAAAAATGTA
ACACGCCTTCAGGCACAGGTCCTCATATATGTTTTGGCATCCAGGTCAAAATGTGGGTACAGCTCCTGATTCCCAGGATA
GAAGATGGAAACAACTTTGGGGTGTCCATTCAGGAGGAAACAGTTGCAGAACTAAGAACTGTTGAGAGTGAAGCTGCATC
TTATCTGGACCAGATTTCTAGATATTATATTACAAGAGCCAAATTGGTTTCTAAAATAGCTAAATATCCCCATGTGGAGG
ACTATCGCCGCACTGTGACAGAGATCGATGAGAAAGAATATATCAGCCTTAGGCTCATCATATCAGAGCTGAGGAATCAA
TATGTCACTCTACATGACATGATCCTGAAAAATATCGAGAAGATCAAACGGCCCCGGAGCAGCAATGCAGAGACTCTGTA
CTGA

Library Parental gene expression (RPM)
SRP051959_colon 17 .42 RPM
SRP051959_heart 12 .26 RPM
SRP051959_kidney 17 .99 RPM
SRP051959_liver 10 .87 RPM
SRP051959_lung 12 .30 RPM
SRP051959_lymph_node 14 .98 RPM
SRP051959_skeletal_muscle 18 .02 RPM
SRP051959_spleen 14 .22 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000013688 ortholog_one2many 2 retrogenes
retro_acar_118, retro_acar_37,
Bos taurus ENSBTAG00000019918 ortholog_one2one 2 retrogenes
retro_btau_1249, retro_btau_941,
Callithrix jacchus ENSCJAG00000007167 within_species_paralog 3 retrogenes
retro_cjac_233, retro_cjac_322, retro_cjac_71,
Cavia porcellus ENSCPOG00000012552 ortholog_one2one 1 retrogene
retro_cpor_1204,
Equus caballus ENSECAG00000012620 ortholog_one2many 2 retrogenes
retro_ecab_29, retro_ecab_827,
Homo sapiens ENSG00000131467 ortholog_one2one 1 retrogene
retro_hsap_245,
Loxodonta africana ENSLAFG00000013446 ortholog_one2one 1 retrogene
retro_lafr_725,
Mustela putorius furo ENSMPUG00000010027 ortholog_one2one 1 retrogene
retro_mputfur_619,
Oryctolagus cuniculus ENSOCUG00000015986 ortholog_one2one 1 retrogene
retro_ocun_641,
Pongo abelii ENSPPYG00000008372 ortholog_one2one 1 retrogene
retro_pabe_413,
Pan troglodytes ENSPTRG00000009225 ortholog_one2one 1 retrogene
retro_ptro_212,
Sus scrofa ENSSSCG00000017385 ortholog_one2one 1 retrogene
retro_sscr_784,
Ictidomys tridecemlineatus ENSSTOG00000028833 ortholog_one2one 1 retrogene
retro_itri_153,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2307 85.93 50.19
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Download FASTA sequences of all ENSCJAG00000013111 retrocopies