Parental gene:

ENSSSCG00000001038

Aliases:None
Description:None
Organism:Pig (Sus scrofa)
Coordinates:7:7774416..7781632(+)


>ENSSSCG00000001038
ATGCAGAAGGATTCCGGCCCACTAGTGCCTTTACATTGGATTGGCTTTGGTTATGCAGCACTGGTTGCTTCCGGTGGGAT
CATTGGCTATGCAAAAGCAGGCAGCGTCCCGTCCCTGGCGGCCGGGCTCCTCTTCGGTGGCCTAGCGGGCCTGGGTGCCT
ACCAGCTGTCTCAGGATCCAAGGAACATTTGGGTTTTCTTAGTTACATCTGGAACCTTGGCTGGCATCATGGGAATGAGA
TTCTACCACTCTGGAAAATTTATGCCTGCGGGCTTGATTGCAGGTGCCAGTTTGCTGATGGTCGCCAAACTTGGAATTAG
TGTGTTGAGTAAACCCCATCCGTAG

Library Parental gene expression (RPM)
SRP014902_placenta 28 .94 RPM
SRP014902_testis 35 .50 RPM
SRP018288_heart 32 .19 RPM
SRP018288_kidney 130 .13 RPM
SRP018288_liver 107 .30 RPM
SRP018288_lung 29 .02 RPM
SRP018856_adipose 54 .33 RPM
SRP035408_brain 28 .81 RPM
SRP035408_liver 57 .13 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002614 ortholog_one2one 3 retrogenes
retro_amel_1256, retro_amel_939, retro_amel_957,
Bos taurus ENSBTAG00000005808 ortholog_one2one 1 retrogene
retro_btau_970,
Canis familiaris ENSCAFG00000009692 ortholog_one2many 2 retrogenes
retro_cfam_115, retro_cfam_1716,
Callithrix jacchus ENSCJAG00000004957 ortholog_one2many 1 retrogene
retro_cjac_725,
Dasypus novemcinctus ENSDNOG00000007732 ortholog_one2many 6 retrogenes
retro_dnov_1220, retro_dnov_1547, retro_dnov_1968, retro_dnov_289, retro_dnov_316, retro_dnov_367,
Equus caballus ENSECAG00000026994 ortholog_one2one 1 retrogene
retro_ecab_659,
Erinaceus europaeus ENSEEUG00000009000 ortholog_one2one 1 retrogene
retro_eeur_26,
Felis catus ENSFCAG00000014178 ortholog_one2many 5 retrogenes
retro_fcat_301, retro_fcat_314, retro_fcat_367, retro_fcat_93, retro_fcat_983,
Homo sapiens ENSG00000111843 ortholog_one2many 2 retrogenes
retro_hsap_1793, retro_hsap_2481,
Homo sapiens ENSG00000137210 ortholog_one2many 1 retrogene
retro_hsap_684,
Gorilla gorilla ENSGGOG00000009702 ortholog_one2many 1 retrogene
retro_ggor_4,
Loxodonta africana ENSLAFG00000009795 ortholog_one2one 2 retrogenes
retro_lafr_1233, retro_lafr_1246,
Macropus eugenii ENSMEUG00000000210 ortholog_one2one 1 retrogene
retro_meug_1704,
Macaca mulatta ENSMMUG00000018788 ortholog_one2many 2 retrogenes
retro_mmul_1244, retro_mmul_1597,
Mustela putorius furo ENSMPUG00000000613 ortholog_one2one 2 retrogenes
retro_mputfur_1322, retro_mputfur_226,
Mus musculus ENSMUSG00000021361 ortholog_one2one 2 retrogenes
retro_mmus_1634, retro_mmus_2355,
Nomascus leucogenys ENSNLEG00000000564 ortholog_one2one 3 retrogenes
retro_nleu_269, retro_nleu_2933, retro_nleu_607,
Oryctolagus cuniculus ENSOCUG00000016368 ortholog_one2one 3 retrogenes
retro_ocun_1129, retro_ocun_1348, retro_ocun_284,
Otolemur garnettii ENSOGAG00000012165 ortholog_one2one 3 retrogenes
retro_ogar_1155, retro_ogar_2425, retro_ogar_3462,
Ochotona princeps ENSOPRG00000014366 ortholog_one2one 4 retrogenes
retro_opri_192, retro_opri_29, retro_opri_409, retro_opri_898,
Pongo abelii ENSPPYG00000016225 ortholog_one2one 1 retrogene
retro_pabe_1473,
Pan troglodytes ENSPTRG00000017720 ortholog_one2many 2 retrogenes
retro_ptro_1199, retro_ptro_1435,
Rattus norvegicus ENSRNOG00000015437 ortholog_one2many 2 retrogenes
retro_rnor_1595, retro_rnor_33,
Sarcophilus harrisii ENSSHAG00000011456 ortholog_one2one 1 retrogene
retro_shar_177,
Ictidomys tridecemlineatus ENSSTOG00000022833 ortholog_one2one 1 retrogene
retro_itri_47,
Tursiops truncatus ENSTTRG00000003666 ortholog_one2one 2 retrogenes
retro_ttru_1504, retro_ttru_258,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_438 81.58 100.00
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_sscr_449 86.09 100.00
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_sscr_614 80.00 100.00
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSSSCG00000001038 retrocopies