Parental gene:

MMU.3940, ENSMMUG00000018788

Aliases:None
Description:None
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:4:10682760..10691029(+)


>ENSMMUG00000018788
ATGCCGGACACCGGCTCAGTAGTGCCTTTGCATTGGTTTGGCTTTGGCTATGCAGCACTGGTTGCTTCTGGTGGGATTAT
TGGCTATGTAAAAGCAGGCAGCGTGCCGTCCCTCGCTGCGGGGCTGCTCTTCGGCAGCCTAGCCGGCTTGGGTGCTTACC
AGCTGTCTCAGGATCCAAGGAACGTTTGGGTTTTCCTAGCTACATCTGGTACCTTGGCTGGCATTATGGGAATGAGATTC
TACAACTCTGGAAAATTCATGCCTGCAGGTTTAATTGCAGGTGCCAGTTTGCTGATGGCTGCCAAAGTTGGAGTTAGTAT
GTTCAACAGACCCCATTAG

Library Parental gene expression (RPM)
SRP007412_brain 16 .81 RPM
SRP007412_brain_prefrontal_cortex 18 .17 RPM
SRP007412_cerebellum 20 .92 RPM
SRP007412_heart 28 .27 RPM
SRP007412_kidney 33 .92 RPM
SRP007412_liver 43 .82 RPM
SRP007412_testis 5 .16 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002614 ortholog_one2many 3 retrogenes
retro_amel_1256, retro_amel_939, retro_amel_957,
Bos taurus ENSBTAG00000005808 ortholog_one2many 1 retrogene
retro_btau_970,
Canis familiaris ENSCAFG00000009692 ortholog_many2many 2 retrogenes
retro_cfam_115, retro_cfam_1716,
Dasypus novemcinctus ENSDNOG00000007732 ortholog_many2many 6 retrogenes
retro_dnov_1220, retro_dnov_1547, retro_dnov_1968, retro_dnov_289, retro_dnov_316, retro_dnov_367,
Equus caballus ENSECAG00000026994 ortholog_one2many 1 retrogene
retro_ecab_659,
Erinaceus europaeus ENSEEUG00000009000 ortholog_one2many 1 retrogene
retro_eeur_26,
Felis catus ENSFCAG00000014178 ortholog_many2many 5 retrogenes
retro_fcat_301, retro_fcat_314, retro_fcat_367, retro_fcat_93, retro_fcat_983,
Homo sapiens ENSG00000111843 ortholog_one2one 2 retrogenes
retro_hsap_1793, retro_hsap_2481,
Loxodonta africana ENSLAFG00000009795 ortholog_one2many 2 retrogenes
retro_lafr_1233, retro_lafr_1246,
Macropus eugenii ENSMEUG00000000210 ortholog_one2many 1 retrogene
retro_meug_1704,
Mustela putorius furo ENSMPUG00000000613 ortholog_one2many 2 retrogenes
retro_mputfur_1322, retro_mputfur_226,
Mus musculus ENSMUSG00000021361 ortholog_one2many 2 retrogenes
retro_mmus_1634, retro_mmus_2355,
Nomascus leucogenys ENSNLEG00000000564 ortholog_one2one 3 retrogenes
retro_nleu_269, retro_nleu_2933, retro_nleu_607,
Oryctolagus cuniculus ENSOCUG00000016368 ortholog_one2many 3 retrogenes
retro_ocun_1129, retro_ocun_1348, retro_ocun_284,
Otolemur garnettii ENSOGAG00000012165 ortholog_one2many 3 retrogenes
retro_ogar_1155, retro_ogar_2425, retro_ogar_3462,
Ochotona princeps ENSOPRG00000014366 ortholog_one2many 4 retrogenes
retro_opri_192, retro_opri_29, retro_opri_409, retro_opri_898,
Pan troglodytes ENSPTRG00000017720 ortholog_one2one 2 retrogenes
retro_ptro_1199, retro_ptro_1435,
Rattus norvegicus ENSRNOG00000015437 ortholog_many2many 2 retrogenes
retro_rnor_1595, retro_rnor_33,
Sarcophilus harrisii ENSSHAG00000011456 ortholog_one2many 1 retrogene
retro_shar_177,
Sus scrofa ENSSSCG00000001038 ortholog_one2many 3 retrogenes
retro_sscr_438, retro_sscr_449, retro_sscr_614,
Ictidomys tridecemlineatus ENSSTOG00000022833 ortholog_one2many 1 retrogene
retro_itri_47,
Tursiops truncatus ENSTTRG00000003666 ortholog_one2many 2 retrogenes
retro_ttru_1504, retro_ttru_258,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_1244 57.33 71.15
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2. retro_mmul_1597 91.30 82.14
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Download FASTA sequences of all ENSMMUG00000018788 retrocopies