Parental gene:

Gabarap, ENSRNOG00000017417

Aliases:None
Description:Gamma-aminobutyric acid receptor-associated protein [Source:UniProtKB/Swiss-Prot;Acc:P60517]
Organism:Rat (Rattus norvegicus)
Coordinates:10:56346336..56349340(+)


>ENSRNOG00000017417
ATGAAGTTCGTGTACAAAGAGGAGCATCCGTTCGAGAAGCGCCGCTCTGAGGGCGAGAAAATCCGAAAGAAATACCCAGA
CCGGGTCCCGGTGATAGTGGAAAAAGCTCCCAAAGCTCGGATAGGGGACCTGGACAAAAAGAAATACTTGGTGCCTTCTG
ATCTTACAGTTGGTCAATTCTACTTCTTGATCCGGAAGCGAATTCATCTCCGTGCTGAAGATGCCTTGTTTTTCTTTGTC
AACAATGTCATTCCACCCACCAGTGCCACGATGGGTCAGCTGTACCAGGAACACCATGAAGAAGACTTCTTTCTATACAT
TGCCTACAGTGATGAAAGCGTCTACGGTCTGTGA

Library Parental gene expression (RPM)
SRP017611_brain 74 .84 RPM
SRP017611_kidney 190 .92 RPM
SRP017611_liver 96 .69 RPM



Species Parental gene accession Homology type Retrogenes number
Ciona intestinalis ENSCING00000012473 ortholog_one2one 1 retrogene
retro_cint_25,
Callithrix jacchus ENSCJAG00000016655 ortholog_one2one 2 retrogenes
retro_cjac_2851, retro_cjac_3820,
Gorilla gorilla ENSGGOG00000013770 ortholog_one2one 1 retrogene
retro_ggor_821,
Loxodonta africana ENSLAFG00000000744 possible_ortholog 1 retrogene
retro_lafr_61,
Macaca mulatta ENSMMUG00000010545 ortholog_one2many 1 retrogene
retro_mmul_155,
Mus musculus ENSMUSG00000018567 ortholog_one2one 1 retrogene
retro_mmus_3107,
Nomascus leucogenys ENSNLEG00000008049 ortholog_one2one 2 retrogenes
retro_nleu_1670, retro_nleu_4,
Oryctolagus cuniculus ENSOCUG00000006997 ortholog_one2one 1 retrogene
retro_ocun_311,
Pongo abelii ENSPPYG00000007901 ortholog_one2one 1 retrogene
retro_pabe_122,
Pan troglodytes ENSPTRG00000034115 ortholog_one2one 1 retrogene
retro_ptro_60,
Rattus norvegicus ENSRNOG00000017905 within_species_paralog 5 retrogenes
retro_rnor_1240, retro_rnor_1739, retro_rnor_1865, retro_rnor_1868, retro_rnor_2033,
Rattus norvegicus ENSRNOG00000019425 within_species_paralog 1 retrogene
retro_rnor_57,
Sus scrofa ENSSSCG00000017936 possible_ortholog 1 retrogene
retro_sscr_163,
Drosophila melanogaster FBgn0052672 ortholog_one2many 1 retrogene
retro_dmel_23,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_1818 92.45 89.74
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2. retro_rnor_2093 88.33 100.00
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Download FASTA sequences of all ENSRNOG00000017417 retrocopies