RetrogeneDB - Parental gene ENSRNOG00000016530 details

                            
>ENSRNOG00000016530
ATGCCACAAAATGAATATATTGAATTGCACCGCAAACGATATGGATATCGTTTGGATTACCATGAGAAAAAGAGAAAGAA

AGAAGGTCGGGAGGCCCATGAACGTTCAAAGAAAGCAAAAAAAATGATCGGCCTGAAGGCTAAGCTCTACCATAAACAGC

GCCATGCCGAGAAAATACAAATGAAAAAGACCATTAAGATGCATGAGAAGAGAAACACCAAGCAGAAGGATGACGAGAAG

ACTCCACAGGGAGCAGTCCCTGCCTACCTGCTAGACAGAGAGGGGCAGTCAAGAGCAAAAGTACTTTCCAACATGATTAA

GCAGAAGCGGAAAGAAAAGGCGGGAAAATGGGAGGTCCCTCTACCCAAAGTTCGTGCCCAAGGAGAAACAGAAGTATTGA

AAGTTATTCGAACAGGAAAAAGAAAAAAGAAGGCATGGAAGAGAATGGTTACAAAAGTCTGCTTTGTTGGTGATGGTTTT

ACAAGAAAACCACCTAAATATGAAAGGTTCATTAGGCCAATGGGTCTACGTTTCAAAAAAGCCCATGTCACACACCCTGA

GCTGAAAGCTACCTTTTGCCTGCCTATACTCGGTGTGAAAAAGAACCCCTCCTCCCCGTTATATACAACCCTGGGTGTGA

TCACCAAAGGGACAGTCATTGAAGTGAATGTAAGCGAGCTGGGCCTTGTGACACAAGGAGGCAAGGTCATTTGGGGAAAG

TATGCTCAAGTTACCAACAATCCTGAAAATGATGGGTGCATAAATGCAGTCTTGCTGGTTTGA

Library	Parental gene expression (RPM)
SRP017611_brain	21 .50 RPM
SRP017611_kidney	26 .94 RPM
SRP017611_liver	10 .15 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000000593	possible_ortholog	5 retrogenes	retro_amel_151, retro_amel_1635, retro_amel_1729, retro_amel_180, retro_amel_734,
Bos taurus	ENSBTAG00000003066	ortholog_one2one	3 retrogenes	retro_btau_326, retro_btau_931, retro_btau_949,
Canis familiaris	ENSCAFG00000008311	possible_ortholog	4 retrogenes	retro_cfam_1292, retro_cfam_361, retro_cfam_49, retro_cfam_64,
Choloepus hoffmanni	ENSCHOG00000012126	possible_ortholog	2 retrogenes	retro_chof_1702, retro_chof_1947,
Callithrix jacchus	ENSCJAG00000016874	possible_ortholog	1 retrogene	retro_cjac_116,
Cavia porcellus	ENSCPOG00000006648	possible_ortholog	1 retrogene	retro_cpor_672,
Dasypus novemcinctus	ENSDNOG00000010615	possible_ortholog	1 retrogene	retro_dnov_428,
Equus caballus	ENSECAG00000005528	ortholog_one2one	1 retrogene	retro_ecab_445,
Echinops telfairi	ENSETEG00000004095	possible_ortholog	13 retrogenes	retro_etel_1086, retro_etel_1479, retro_etel_1786, retro_etel_2030, retro_etel_2112, retro_etel_2116, retro_etel_2197, retro_etel_359, retro_etel_613, retro_etel_729, retro_etel_890, retro_etel_940, retro_etel_988,
Felis catus	ENSFCAG00000011978	possible_ortholog	1 retrogene	retro_fcat_98,
Homo sapiens	ENSG00000164346	possible_ortholog	4 retrogenes	retro_hsap_1144, retro_hsap_1577, retro_hsap_4731, retro_hsap_493,
Gorilla gorilla	ENSGGOG00000014365	possible_ortholog	6 retrogenes	retro_ggor_1200, retro_ggor_2136, retro_ggor_2939, retro_ggor_463, retro_ggor_824, retro_ggor_891,
Loxodonta africana	ENSLAFG00000009910	possible_ortholog	4 retrogenes	retro_lafr_253, retro_lafr_455, retro_lafr_620, retro_lafr_714,
Macropus eugenii	ENSMEUG00000015798	possible_ortholog	3 retrogenes	retro_meug_1191, retro_meug_1408, retro_meug_161,
Microcebus murinus	ENSMICG00000000752	possible_ortholog	3 retrogenes	retro_mmur_1074, retro_mmur_374, retro_mmur_925,
Myotis lucifugus	ENSMLUG00000014464	ortholog_one2one	4 retrogenes	retro_mluc_1596, retro_mluc_1664, retro_mluc_757, retro_mluc_917,
Macaca mulatta	ENSMMUG00000011196	possible_ortholog	6 retrogenes	retro_mmul_1984, retro_mmul_2219, retro_mmul_2523, retro_mmul_408, retro_mmul_441, retro_mmul_890,
Monodelphis domestica	ENSMODG00000001900	possible_ortholog	4 retrogenes	retro_mdom_115, retro_mdom_1702, retro_mdom_581, retro_mdom_592,
Mustela putorius furo	ENSMPUG00000005795	possible_ortholog	5 retrogenes	retro_mputfur_153, retro_mputfur_250, retro_mputfur_510, retro_mputfur_573, retro_mputfur_690,
Mus musculus	ENSMUSG00000060739	ortholog_one2one	25 retrogenes	retro_mmus_1121, retro_mmus_1329, retro_mmus_1472, retro_mmus_1558, retro_mmus_1587, retro_mmus_1751, retro_mmus_1785, retro_mmus_1819, retro_mmus_1890, retro_mmus_2426, retro_mmus_2617, retro_mmus_2706, retro_mmus_2806, retro_mmus_3105, retro_mmus_3246, retro_mmus_3302, retro_mmus_3340, retro_mmus_3485, retro_mmus_3671, retro_mmus_3713, retro_mmus_402, retro_mmus_518, retro_mmus_674, retro_mmus_690, retro_mmus_890,
Nomascus leucogenys	ENSNLEG00000005046	possible_ortholog	10 retrogenes	retro_nleu_1026, retro_nleu_1507, retro_nleu_1758, retro_nleu_1759, retro_nleu_1929, retro_nleu_2255, retro_nleu_2565, retro_nleu_2675, retro_nleu_768, retro_nleu_943,
Oryctolagus cuniculus	ENSOCUG00000006536	possible_ortholog	6 retrogenes	retro_ocun_149, retro_ocun_1591, retro_ocun_1602, retro_ocun_306, retro_ocun_658, retro_ocun_76,
Ochotona princeps	ENSOPRG00000001867	possible_ortholog	7 retrogenes	retro_opri_1145, retro_opri_1195, retro_opri_254, retro_opri_427, retro_opri_654, retro_opri_778, retro_opri_83,
Pongo abelii	ENSPPYG00000025926	possible_ortholog	8 retrogenes	retro_pabe_1300, retro_pabe_1715, retro_pabe_240, retro_pabe_3434, retro_pabe_3570, retro_pabe_3678, retro_pabe_950, retro_pabe_976,
Pan troglodytes	ENSPTRG00000016990	possible_ortholog	6 retrogenes	retro_ptro_1063, retro_ptro_1713, retro_ptro_2105, retro_ptro_3146, retro_ptro_372, retro_ptro_779,
Pteropus vampyrus	ENSPVAG00000005396	ortholog_one2one	2 retrogenes	retro_pvam_1352, retro_pvam_476,
Sorex araneus	ENSSARG00000009424	possible_ortholog	4 retrogenes	retro_sara_555, retro_sara_589, retro_sara_620, retro_sara_703,
Sarcophilus harrisii	ENSSHAG00000017654	possible_ortholog	5 retrogenes	retro_shar_292, retro_shar_336, retro_shar_495, retro_shar_679, retro_shar_745,
Sus scrofa	ENSSSCG00000014075	ortholog_one2one	2 retrogenes	retro_sscr_287, retro_sscr_288,
Ictidomys tridecemlineatus	ENSSTOG00000007959	possible_ortholog	3 retrogenes	retro_itri_1630, retro_itri_1638, retro_itri_860,
Tupaia belangeri	ENSTBEG00000012978	possible_ortholog	56 retrogenes	retro_tbel_1062, retro_tbel_1078, retro_tbel_1141, retro_tbel_1317, retro_tbel_1329, retro_tbel_1476, retro_tbel_152, retro_tbel_1548, retro_tbel_1569, retro_tbel_1627, retro_tbel_1733, retro_tbel_1762, retro_tbel_1778, retro_tbel_179, retro_tbel_1845, retro_tbel_1940, retro_tbel_2102, retro_tbel_2113, retro_tbel_2138, retro_tbel_2220, retro_tbel_229, retro_tbel_254, retro_tbel_2586, retro_tbel_2757, retro_tbel_2784, retro_tbel_3016, retro_tbel_3040, retro_tbel_3116, retro_tbel_3264, retro_tbel_3298, retro_tbel_3417, retro_tbel_3514, retro_tbel_3601, retro_tbel_3650, retro_tbel_3724, retro_tbel_3736, retro_tbel_3763, retro_tbel_3795, retro_tbel_4028, retro_tbel_406, retro_tbel_4104, retro_tbel_4169, retro_tbel_4270, retro_tbel_430, retro_tbel_4401, retro_tbel_4422, retro_tbel_4491, retro_tbel_4503, retro_tbel_4513, retro_tbel_4642, retro_tbel_4689, retro_tbel_535, retro_tbel_670, retro_tbel_721, retro_tbel_897, retro_tbel_91,
Tursiops truncatus	ENSTTRG00000005219	possible_ortholog	1 retrogene	retro_ttru_1468,
Vicugna pacos	ENSVPAG00000007368	possible_ortholog	2 retrogenes	retro_vpac_111, retro_vpac_528,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_rnor_618	86.01	54.62	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_rnor_945	63.52	59.62	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_rnor_951	51.08	52.31	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_rnor_1074	83.65	100.00	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_rnor_1317	91.78	83.85	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_rnor_1366	88.99	83.85	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_rnor_1921	84.90	73.85	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_rnor_2630	86.96	61.15	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_rnor_2745	75.93	62.31	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_rnor_2767	80.82	55.38	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_rnor_2817	80.54	70.77	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_rnor_2820	89.39	100.00	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_rnor_2852	78.93	91.92	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_rnor_2877	82.13	100.00	Please wait, loading	Please wait, loading	Please wait, loading
15.	retro_rnor_2964	85.17	99.62	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSRNOG00000016530 retrocopies

Parental gene:	Nsa2, ENSRNOG00000016530
Aliases:	Nsa2, Cdk105, Tinp1
Description:	ribosome biogenesis protein NSA2 homolog [Source:RefSeq peptide;Acc:NP_599242]
Organism:	*Rat (Rattus norvegicus)*
Coordinates:	2:47053383..47060005(-)

Parental gene:

Nsa2, ENSRNOG00000016530