Parental gene:

Epcam, ENSRNOG00000015667

Aliases:Epcam, Egp314, Tacstd1
Description:Epithelial cell adhesion molecule [Source:UniProtKB/Swiss-Prot;Acc:O55159]
Organism:Rat (Rattus norvegicus)
Coordinates:6:21264137..21280102(-)


>ENSRNOG00000015667
ATGGCGCCCCCCAAGGCCCTCGCGTTCGGGCTCCTGCTCGCGGTGGTCACGGCGACGCTGGCCGCAGCTCAGAAAGACTG
TGTCTGTAACAACTACAAGCTGACGTCACGGTGCTATGAGAATGAGAATGGTGAATGCCAGTGTACTTCCTATGGGACAC
AAAATACTGTCATTTGCTCCAAACTGGCATCCAAGTGCTTGGTGATGAAGGCGGAGATGACTCACAGCAAGTCTGGGAGG
AGGATGAAACCCGAGGGGGCGATCCAGAACAACGACGGTCTGTATGATCCCGAGTGTGACGAGCAAGGGCTCTTCAAAGC
CAAGCAGTGCAACGGCACCGCCACGTGCTGGTGCGTGAACACCGCGGGTGTCCGGAGAACCGACAAGGACACGGAGATCA
CGTGCTCCGAGAGAGTGAGGACCTACTGGATCATCATTGAGCTCAAACACAAAGAAAGAGCACAGCCTTATAACTTCGAG
AGTTTGCATACTGCACTTCAGGACACATTTGCATCTCGATACATGCTGAATCCGAAATTTATCAAAAGTATTATGTATGA
GAATAATGTTATCACTATTGATTTGATGCAAAACTCTTCTCAGAAGACTCAAGATGATGTGGACATAGCTGATGTGGCTT
ACTATTTTGAGAAAGATGTAAAGGGGGAGTCCTTGTTCCATTCATCTAAGAGCATGGACCTGAGGGTGAACGGGGAGCTC
CTCGATCTGGACCCCGGGCAGACTCTGATTTACTACGTCGATGAAAAGGCCCCGGAGTTTTCCATGCAGGGCCTCACGGC
TGGGATCATCGCCGTCATTGTCGTGGTGGTGTTAGCAGTCATTGCGGGGATTGTTGTCCTGGTTATATCTACAAGGAAGA
GATCAGCAAAATATGAGAAGGCTGAGATAAAGGAGATGGGTGAGATACACAGAGAGCTCAATGCCTAA

Library Parental gene expression (RPM)
SRP017611_brain 0 .86 RPM
SRP017611_kidney 433 .21 RPM
SRP017611_liver 12 .71 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000006474 ortholog_one2one 1 retrogene
retro_btau_66,
Choloepus hoffmanni ENSCHOG00000013834 ortholog_one2one 1 retrogene
retro_chof_258,
Callithrix jacchus ENSCJAG00000000624 ortholog_one2one 1 retrogene
retro_cjac_3006,
Dasypus novemcinctus ENSDNOG00000011799 ortholog_one2one 1 retrogene
retro_dnov_345,
Erinaceus europaeus ENSEEUG00000009462 ortholog_one2one 1 retrogene
retro_eeur_151,
Macropus eugenii ENSMEUG00000015074 ortholog_one2one 2 retrogenes
retro_meug_1984, retro_meug_474,
Microcebus murinus ENSMICG00000000151 ortholog_one2one 1 retrogene
retro_mmur_739,
Macaca mulatta ENSMMUG00000012390 ortholog_one2one 1 retrogene
retro_mmul_34,
Monodelphis domestica ENSMODG00000001077 ortholog_one2one 1 retrogene
retro_mdom_104,
Mus musculus ENSMUSG00000045394 ortholog_one2one 1 retrogene
retro_mmus_185,
Ochotona princeps ENSOPRG00000004301 ortholog_one2one 1 retrogene
retro_opri_1225,
Pelodiscus sinensis ENSPSIG00000015680 ortholog_one2one 1 retrogene
retro_psin_22,
Pan troglodytes ENSPTRG00000011902 ortholog_one2one 1 retrogene
retro_ptro_92,
Sus scrofa ENSSSCG00000008429 ortholog_one2one 1 retrogene
retro_sscr_69,
Ictidomys tridecemlineatus ENSSTOG00000008631 ortholog_one2one 1 retrogene
retro_itri_106,
Tursiops truncatus ENSTTRG00000004235 ortholog_one2one 2 retrogenes
retro_ttru_21, retro_ttru_394,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_252 51.15 95.87
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Download FASTA sequences of all ENSRNOG00000015667 retrocopies