Parental gene:

EPCAM, ENSDNOG00000011799

Aliases:None
Description:epithelial cell adhesion molecule [Source:HGNC Symbol;Acc:11529]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_995:19463..28137(+)


>ENSDNOG00000011799
ACTGAGGACGAGGGCCCCACCCGCCCCCAGGCGGTGACTCATCCCCTAGAACCCGGGGGCAGAGAATGTATCTGTGAAAA
CTACAAGCTGACCACAAACTGCTCTGTGAACATCAATGGTCAATGCCAGTGTGTTTCAATTGGTACACAAAATACTGTCA
TTTGCTCAAAATTGGCTACCAAATGTTTGGTGATGAAGGCGGAAATGACTGGCTCAAAGACTGGAAGAAGAGCGAAGCCT
GAAGGGGCGATCCAGAACAATGATGGGCTTTATGACCCTGACTGTGATGAGAAGGGACTCTTTAAAGCCAGGCAGTGCAA
TGGCACCGCCACGTGCTGGTGTGTGAACACTGCCGGGGTCCGAAGAACCGATAAGAACACCGAAATAACGTGCTCTGAAC
GTGTGAGGACCTACTGGATCATCATTGAATTAAAACACAAAACAAGAGAAAAACCTTATGATGTTGAAAGTTTGCGGTAT
GCTCTTGAGACAGCAATCACAACTCGTTATCAACTGGATCCAAAATATATCACAAATATTCTGTATGAAAATGATGTTAT
CACTATTGACCTGGTACAAAATTCTTCTCAGAAAACTCAGAATGATGTGGACATAGCTGACGTAGCTTATTATTTTGAAA
AAGATGTTAAAGGTGAATCCTTATTTCATTCCAATAACATGGACCTGAAAGTAAACGGGGAACAACTAGATCTGGATCCT
GGTCAAACTTTAATTTACTATGTTGATGAAAAGTCACCTGAGTTTTCAATGCAGGGTCTACAAGCTGGTATTATTGCTGT
CATTGTGGTTGTGACAATAGCAATTATTGCTGGAATTGTTGTGCTG

Library Parental gene expression (RPM)
SRP012922_ascending_colon 280 .03 RPM
SRP012922_cerebellum 7 .70 RPM
SRP012922_heart 0 .93 RPM
SRP012922_kidney 64 .62 RPM
SRP012922_liver 9 .60 RPM
SRP012922_lung 49 .02 RPM
SRP012922_quadricep_muscle 0 .00 RPM
SRP012922_spleen 1 .26 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000006474 ortholog_one2one 1 retrogene
retro_btau_66,
Choloepus hoffmanni ENSCHOG00000013834 ortholog_one2one 1 retrogene
retro_chof_258,
Callithrix jacchus ENSCJAG00000000624 ortholog_one2one 1 retrogene
retro_cjac_3006,
Erinaceus europaeus ENSEEUG00000009462 ortholog_one2one 1 retrogene
retro_eeur_151,
Macropus eugenii ENSMEUG00000015074 ortholog_one2one 2 retrogenes
retro_meug_1984, retro_meug_474,
Microcebus murinus ENSMICG00000000151 ortholog_one2one 1 retrogene
retro_mmur_739,
Macaca mulatta ENSMMUG00000012390 ortholog_one2one 1 retrogene
retro_mmul_34,
Monodelphis domestica ENSMODG00000001077 ortholog_one2one 1 retrogene
retro_mdom_104,
Mus musculus ENSMUSG00000045394 ortholog_one2one 1 retrogene
retro_mmus_185,
Ochotona princeps ENSOPRG00000004301 ortholog_one2one 1 retrogene
retro_opri_1225,
Pelodiscus sinensis ENSPSIG00000015680 ortholog_one2one 1 retrogene
retro_psin_22,
Pan troglodytes ENSPTRG00000011902 ortholog_one2one 1 retrogene
retro_ptro_92,
Rattus norvegicus ENSRNOG00000015667 ortholog_one2one 1 retrogene
retro_rnor_252,
Sus scrofa ENSSSCG00000008429 ortholog_one2one 1 retrogene
retro_sscr_69,
Ictidomys tridecemlineatus ENSSTOG00000008631 ortholog_one2one 1 retrogene
retro_itri_106,
Tursiops truncatus ENSTTRG00000004235 ortholog_one2one 2 retrogenes
retro_ttru_21, retro_ttru_394,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_345 73.80 64.89
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Download FASTA sequences of all ENSDNOG00000011799 retrocopies