Parental gene:

EPCAM, ENSPTRG00000011902

Aliases:None
Description:epithelial cell adhesion molecule [Source:HGNC Symbol;Acc:11529]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:2A:48105165..48147435(+)


>ENSPTRG00000011902
TGTGTCTGTGAAAACTACAAGCTGGCCGTAAACTGCTTTGTGAATAATAATCATCAATGCCAGTGTACTTCAATTGGTGC
ACAAAATACTGTCATTTGCTCAAAGCTGGCTGCCAAATGTTTGGTGATGAAGGCAGAAATGAATGGCTCCAAACTTGGGA
GAAGAGCAAAACCTGAAGGGGCCCTCCAGAACAATGATGGGCTTTATGATCCTGACTGCGATGAGAGCGGGCTCTTTAAG
GCCAAGCAGTGCAACGGCACCTCCACGTGCTGGTGTGTGAACACTGCTGGGGTCAGAAGAACAGACAAGGACACTGAAAT
AACCTGCTCTGAGCGAGTGAGAACCTACTGGATCATCATTGAACTAAAACACAAAGCAAGAGAAAAACCTTATGATGGTA
AAAGTTTGCGGACTGCACTTCAGAAGGAGATCACAACGCGTTATCAACTGGATCCAAAATTTATCACGAATATTTTGTAT
GAGAATAATGTTATCACTATTGATCTGGTTCAAAATTCTTCTCAAAAAACTCAGAATGATGTGGACATAGCTGATGTGGC
TTATTATTTTGAAAAAGATGTTAAAGGTGAATCCTTGTTTCATTCTAAGAAAATGGACCTGACAGTAAATGGGGAACAAC
TGGATCTGGATCCTGGTCAAACTTTAATTTATTATGTTGATGAAAAAGCACCTGAATTCTCAATGCAGGGTCTAAAAGCT
GGTGTTATTGCTGTTATTGTGGTTGTGGTGATAGCAGTTGTTGCTGGAATTGTTGTGCTGGTTTTTTCCAGAAAGAAGAG
AATGGCAAAGTATGAGAAGGCTGAGATAAAGGAGATGGGTGAGATGCATAGGGAACTCAATGCATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 1 .14 RPM
SRP007412_cerebellum 0 .22 RPM
SRP007412_heart 0 .26 RPM
SRP007412_kidney 181 .89 RPM
SRP007412_liver 8 .94 RPM
SRP007412_testis 11 .38 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000006474 ortholog_one2one 1 retrogene
retro_btau_66,
Choloepus hoffmanni ENSCHOG00000013834 ortholog_one2one 1 retrogene
retro_chof_258,
Callithrix jacchus ENSCJAG00000000624 ortholog_one2one 1 retrogene
retro_cjac_3006,
Dasypus novemcinctus ENSDNOG00000011799 ortholog_one2one 1 retrogene
retro_dnov_345,
Erinaceus europaeus ENSEEUG00000009462 ortholog_one2one 1 retrogene
retro_eeur_151,
Macropus eugenii ENSMEUG00000015074 ortholog_one2one 2 retrogenes
retro_meug_1984, retro_meug_474,
Microcebus murinus ENSMICG00000000151 ortholog_one2one 1 retrogene
retro_mmur_739,
Macaca mulatta ENSMMUG00000012390 ortholog_one2one 1 retrogene
retro_mmul_34,
Monodelphis domestica ENSMODG00000001077 ortholog_one2one 1 retrogene
retro_mdom_104,
Mus musculus ENSMUSG00000045394 ortholog_one2one 1 retrogene
retro_mmus_185,
Ochotona princeps ENSOPRG00000004301 ortholog_one2one 1 retrogene
retro_opri_1225,
Pelodiscus sinensis ENSPSIG00000015680 ortholog_one2one 1 retrogene
retro_psin_22,
Rattus norvegicus ENSRNOG00000015667 ortholog_one2one 1 retrogene
retro_rnor_252,
Sus scrofa ENSSSCG00000008429 ortholog_one2one 1 retrogene
retro_sscr_69,
Ictidomys tridecemlineatus ENSSTOG00000008631 ortholog_one2one 1 retrogene
retro_itri_106,
Tursiops truncatus ENSTTRG00000004235 ortholog_one2one 2 retrogenes
retro_ttru_21, retro_ttru_394,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_92 50.17 98.96
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Download FASTA sequences of all ENSPTRG00000011902 retrocopies