RetrogeneDB - Parental gene ENSRNOG00000015335 details

                            
>ENSRNOG00000015335
ATGGCGCCCAGCCGGAATGGCATGATCCTGAAGCCCCACTTCCACAAGGACTGGCAGCAGCGAGTGGACACGTGGTTCAA

CCAGCCGGCCCGCAAGATCCGCAGACGCAAGGCCCGGCAGGCGAAAGCGCGCCGCATCGCCCCTCGCCCCGCGTCCGGTC

CCATCAGGCCCATCGTGAGGTGCCCTACAGTTAGATACCACACCAAGGTCCGGGCTGGCAGGGGCTTCAGCCTGGAGGAG

CTCAGGGTGGCTGGTATCCACAAGAAAATGGCACGCACCATCGGCATCTCCGTGGACCCAAGGAGGCGAAACAAATCCAC

GGAGTCACTGCAGGCCAACGTGCAGCGCCTGAAGGAGTACCGCTCCAAGCTCATACTTTTCCCCAGGAAGCCTTCTGCTC

CGAAGAAGGGAGACAGTTCTGCTGAAGAACTTAAATTGGCCACGCAGCTAACAGGACCTGTGATGCCCATCCGGAATGTG

TACAAAAAGGAGAAGGCCAGAGCCATCACGGAAGAGGAGAAGAACTTTAAGGCTTTCGCCAGCCTTCGCATGGCCCGAGC

CAATGCCCGGCTCTTCGGCATCCGAGCAAAGAGGGCGAAAGAAGCCGCAGAGCAAGACGTTGAGAAGAAGAAATAA

Library	Parental gene expression (RPM)
SRP017611_brain	82 .68 RPM
SRP017611_kidney	84 .79 RPM
SRP017611_liver	55 .87 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Anolis carolinensis	ENSACAG00000017072	ortholog_one2many	1 retrogene	retro_acar_70,
Ailuropoda melanoleuca	ENSAMEG00000001111	possible_ortholog	5 retrogenes	retro_amel_1268, retro_amel_1319, retro_amel_188, retro_amel_411, retro_amel_802,
Bos taurus	ENSBTAG00000012044	possible_ortholog	2 retrogenes	retro_btau_716, retro_btau_817,
Canis familiaris	ENSCAFG00000019840	possible_ortholog	5 retrogenes	retro_cfam_1135, retro_cfam_1919, retro_cfam_2122, retro_cfam_565, retro_cfam_897,
Callithrix jacchus	ENSCJAG00000009672	possible_ortholog	5 retrogenes	retro_cjac_2607, retro_cjac_2961, retro_cjac_4054, retro_cjac_663, retro_cjac_747,
Cavia porcellus	ENSCPOG00000027348	possible_ortholog	4 retrogenes	retro_cpor_1014, retro_cpor_1192, retro_cpor_1242, retro_cpor_491,
Echinops telfairi	ENSETEG00000015057	possible_ortholog	4 retrogenes	retro_etel_1240, retro_etel_1382, retro_etel_1606, retro_etel_703,
Felis catus	ENSFCAG00000003338	possible_ortholog	4 retrogenes	retro_fcat_1946, retro_fcat_706, retro_fcat_852, retro_fcat_866,
Homo sapiens	ENSG00000167526	possible_ortholog	12 retrogenes	retro_hsap_1377, retro_hsap_1810, retro_hsap_2070, retro_hsap_2430, retro_hsap_2485, retro_hsap_2824, retro_hsap_3207, retro_hsap_3281, retro_hsap_3443, retro_hsap_4074, retro_hsap_478, retro_hsap_951,
Gorilla gorilla	ENSGGOG00000025427	possible_ortholog	6 retrogenes	retro_ggor_1548, retro_ggor_1963, retro_ggor_2231, retro_ggor_2732, retro_ggor_562, retro_ggor_767,
Loxodonta africana	ENSLAFG00000004054	possible_ortholog	5 retrogenes	retro_lafr_659, retro_lafr_766, retro_lafr_827, retro_lafr_828, retro_lafr_829,
Microcebus murinus	ENSMICG00000008191	possible_ortholog	4 retrogenes	retro_mmur_249, retro_mmur_288, retro_mmur_779, retro_mmur_908,
Myotis lucifugus	ENSMLUG00000010950	possible_ortholog	6 retrogenes	retro_mluc_1431, retro_mluc_1436, retro_mluc_1549, retro_mluc_2022, retro_mluc_891, retro_mluc_991,
Macaca mulatta	ENSMMUG00000017928	possible_ortholog	7 retrogenes	retro_mmul_2021, retro_mmul_2150, retro_mmul_2350, retro_mmul_579, retro_mmul_593, retro_mmul_737, retro_mmul_781,
Monodelphis domestica	ENSMODG00000003663	ortholog_one2many	4 retrogenes	retro_mdom_1001, retro_mdom_416, retro_mdom_439, retro_mdom_674,
Mus musculus	ENSMUSG00000000740	possible_ortholog	23 retrogenes	retro_mmus_1091, retro_mmus_1522, retro_mmus_1533, retro_mmus_1854, retro_mmus_2074, retro_mmus_2163, retro_mmus_2186, retro_mmus_2321, retro_mmus_2333, retro_mmus_2351, retro_mmus_25, retro_mmus_2668, retro_mmus_2718, retro_mmus_3097, retro_mmus_3274, retro_mmus_3453, retro_mmus_3489, retro_mmus_3500, retro_mmus_355, retro_mmus_3711, retro_mmus_692, retro_mmus_732, retro_mmus_863,
Nomascus leucogenys	ENSNLEG00000015774	possible_ortholog	13 retrogenes	retro_nleu_1156, retro_nleu_1202, retro_nleu_2299, retro_nleu_238, retro_nleu_2457, retro_nleu_2530, retro_nleu_2657, retro_nleu_273, retro_nleu_2732, retro_nleu_2885, retro_nleu_3016, retro_nleu_789, retro_nleu_892,
Ornithorhynchus anatinus	ENSOANG00000006729	ortholog_one2many	1 retrogene	retro_oana_78,
Otolemur garnettii	ENSOGAG00000026444	possible_ortholog	3 retrogenes	retro_ogar_1165, retro_ogar_1831, retro_ogar_1853,
Pan troglodytes	ENSPTRG00000008480	possible_ortholog	12 retrogenes	retro_ptro_1175, retro_ptro_1382, retro_ptro_1402, retro_ptro_1438, retro_ptro_1914, retro_ptro_2219, retro_ptro_2242, retro_ptro_2336, retro_ptro_2761, retro_ptro_359, retro_ptro_658, retro_ptro_946,
Pteropus vampyrus	ENSPVAG00000015130	possible_ortholog	6 retrogenes	retro_pvam_1174, retro_pvam_1289, retro_pvam_1344, retro_pvam_228, retro_pvam_58, retro_pvam_616,
Sus scrofa	ENSSSCG00000024974	possible_ortholog	3 retrogenes	retro_sscr_1044, retro_sscr_725, retro_sscr_884,
Vicugna pacos	ENSVPAG00000000569	ortholog_one2many	4 retrogenes	retro_vpac_310, retro_vpac_312, retro_vpac_576, retro_vpac_631,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_rnor_158	94.79	100.00	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_rnor_160	98.58	100.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_rnor_682	99.53	100.00	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_rnor_1054	98.58	100.00	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_rnor_1260	66.29	82.94	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_rnor_1719	78.30	100.00	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_rnor_1720	78.30	100.00	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_rnor_1834	82.11	89.57	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_rnor_1848	94.81	100.00	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_rnor_2471	71.92	94.79	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_rnor_2574	96.21	99.53	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_rnor_2608	99.53	100.00	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_rnor_2787	75.61	95.73	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_rnor_2854	97.63	99.53	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSRNOG00000015335 retrocopies

Parental gene:	Rpl13, ENSRNOG00000015335
Aliases:	None
Description:	60S ribosomal protein L13 [Source:UniProtKB/Swiss-Prot;Acc:P41123]
Organism:	*Rat (Rattus norvegicus)*
Coordinates:	19:66622802..66625369(+)

Parental gene:

Rpl13, ENSRNOG00000015335