RetrogeneDB - Parental gene ENSPTRG00000008480 details

                            
>ENSPTRG00000008480
ATGGCGCCCAGCCGGAATGGCATGGTCTTGAAGCCCCACTTCCACAAGGACTGGCAGCGGCGCGTGGCCACGTGGTTCAA

CCAGCCGGCCCGGAAGATCCGCAGACGTAAGGCCCGGCAAGCCAAGGCGCGCCGCATCGCCCCGCGCCCCGCGTCGGGGC

CCATCCGGCCCATCGTGCGCTGCCCCACGGTTCGGTACCACACGAAGGTGCGCGCCGGCCGCGGCTTCAGCCTGGAGGAG

CTCAGGGTGGCCGGCATTCACAAGAAGGTGGCCCGGACCATCGGCATTTCTGTGGATCCGAGGAGGCGGAACAAGTCCAC

GGAGTCCCTGCAGGCCAACGTGCAGCGGCTGAAGGAGTACCGCTCCAAACTCATCCTCTTCCCCAGGAAGCCCTCGGCCC

CCAAGAAGGGAGACAGTTCTGCTGAAGAACTGAAACTAGCCACCCAGCTGACCGGACCGGTCATGCCCATCCGGAACGTC

TATAAGAAGGAGAAAGCTCGAGTGATCACTGAGGAAGAGAAGAATTTCAAAGCCTTCGCTAGCCTCCGTATGGCCCGTGC

CAACGCCCGGCTCTTCGGCATACGGGCAAAAAGAGCCAAGGAAGCCGCAGAACAGGATGTTGAAAAGAAAAAATAA

Library	Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex	178 .87 RPM
SRP007412_cerebellum	146 .69 RPM
SRP007412_heart	85 .37 RPM
SRP007412_kidney	338 .80 RPM
SRP007412_liver	301 .87 RPM
SRP007412_testis	39 .31 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Anolis carolinensis	ENSACAG00000017072	ortholog_one2one	1 retrogene	retro_acar_70,
Canis familiaris	ENSCAFG00000019840	ortholog_one2one	5 retrogenes	retro_cfam_1135, retro_cfam_1919, retro_cfam_2122, retro_cfam_565, retro_cfam_897,
Callithrix jacchus	ENSCJAG00000009672	possible_ortholog	5 retrogenes	retro_cjac_2607, retro_cjac_2961, retro_cjac_4054, retro_cjac_663, retro_cjac_747,
Cavia porcellus	ENSCPOG00000027348	ortholog_one2one	4 retrogenes	retro_cpor_1014, retro_cpor_1192, retro_cpor_1242, retro_cpor_491,
Echinops telfairi	ENSETEG00000015057	possible_ortholog	4 retrogenes	retro_etel_1240, retro_etel_1382, retro_etel_1606, retro_etel_703,
Felis catus	ENSFCAG00000003338	ortholog_one2one	4 retrogenes	retro_fcat_1946, retro_fcat_706, retro_fcat_852, retro_fcat_866,
Homo sapiens	ENSG00000167526	ortholog_one2one	12 retrogenes	retro_hsap_1377, retro_hsap_1810, retro_hsap_2070, retro_hsap_2430, retro_hsap_2485, retro_hsap_2824, retro_hsap_3207, retro_hsap_3281, retro_hsap_3443, retro_hsap_4074, retro_hsap_478, retro_hsap_951,
Microcebus murinus	ENSMICG00000008191	ortholog_one2one	4 retrogenes	retro_mmur_249, retro_mmur_288, retro_mmur_779, retro_mmur_908,
Myotis lucifugus	ENSMLUG00000010950	ortholog_one2one	6 retrogenes	retro_mluc_1431, retro_mluc_1436, retro_mluc_1549, retro_mluc_2022, retro_mluc_891, retro_mluc_991,
Monodelphis domestica	ENSMODG00000003663	ortholog_one2one	4 retrogenes	retro_mdom_1001, retro_mdom_416, retro_mdom_439, retro_mdom_674,
Mus musculus	ENSMUSG00000000740	possible_ortholog	23 retrogenes	retro_mmus_1091, retro_mmus_1522, retro_mmus_1533, retro_mmus_1854, retro_mmus_2074, retro_mmus_2163, retro_mmus_2186, retro_mmus_2321, retro_mmus_2333, retro_mmus_2351, retro_mmus_25, retro_mmus_2668, retro_mmus_2718, retro_mmus_3097, retro_mmus_3274, retro_mmus_3453, retro_mmus_3489, retro_mmus_3500, retro_mmus_355, retro_mmus_3711, retro_mmus_692, retro_mmus_732, retro_mmus_863,
Nomascus leucogenys	ENSNLEG00000015774	ortholog_one2one	13 retrogenes	retro_nleu_1156, retro_nleu_1202, retro_nleu_2299, retro_nleu_238, retro_nleu_2457, retro_nleu_2530, retro_nleu_2657, retro_nleu_273, retro_nleu_2732, retro_nleu_2885, retro_nleu_3016, retro_nleu_789, retro_nleu_892,
Ornithorhynchus anatinus	ENSOANG00000006729	ortholog_one2one	1 retrogene	retro_oana_78,
Otolemur garnettii	ENSOGAG00000026444	ortholog_one2one	3 retrogenes	retro_ogar_1165, retro_ogar_1831, retro_ogar_1853,
Pteropus vampyrus	ENSPVAG00000015130	ortholog_one2one	6 retrogenes	retro_pvam_1174, retro_pvam_1289, retro_pvam_1344, retro_pvam_228, retro_pvam_58, retro_pvam_616,
Rattus norvegicus	ENSRNOG00000015335	possible_ortholog	14 retrogenes	retro_rnor_1054, retro_rnor_1260, retro_rnor_158, retro_rnor_160, retro_rnor_1719, retro_rnor_1720, retro_rnor_1834, retro_rnor_1848, retro_rnor_2471, retro_rnor_2574, retro_rnor_2608, retro_rnor_2787, retro_rnor_2854, retro_rnor_682,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_ptro_359	75.47	100.00	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_ptro_658	68.39	73.46	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_ptro_946	78.12	90.52	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_ptro_1175	97.17	100.00	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_ptro_1382	78.50	50.71	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_ptro_1402	79.39	77.25	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_ptro_1438	71.90	72.04	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_ptro_1914	60.77	59.72	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_ptro_2219	70.80	63.98	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_ptro_2242	63.24	85.78	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_ptro_2336	81.55	78.67	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_ptro_2761	76.43	73.93	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSPTRG00000008480 retrocopies

Parental gene:	RPL13, ENSPTRG00000008480
Aliases:	None
Description:	ribosomal protein L13 [Source:HGNC Symbol;Acc:10303]
Organism:	*Chimpanzee (Pan troglodytes)*
Coordinates:	16:89291894..89294703(+)

Parental gene:

RPL13, ENSPTRG00000008480