Parental gene:

Rpl4, ENSRNOG00000009378

Aliases:None
Description:60S ribosomal protein L4 [Source:RefSeq peptide;Acc:NP_071955]
Organism:Rat (Rattus norvegicus)
Coordinates:8:68827906..68833042(+)


>ENSRNOG00000009378
ATGGCTTGTGCCCGTCCCCTCATATCGGTGTACTCTGAAAAGGGGGAGTCATCTGGCAAGAATGTCACTTTGCCAGCTGT
GTTCAAAGCTCCCATTCGACCGGATATTGTGAACTTTGTTCACACCAACTTGAGGAAGAACAATAGACAGCCCTATGCTG
TCAGTGAATTAGCAGGTCATCAGACCAGTGCTGAGTCCTGGGGTACTGGTAGAGCTGTGGCTCGAATTCCAAGAGTTCGA
GGTGGTGGCACCCACCGTTCTGGCCAGGGTGCCTTTGGAAACATGTGTCGTGGAGGCCGCATGTTTGCACCAACCAAAAC
CTGGCGTCGTTGGCATCGCAGAGTGAACACAACTCAGAAACGATATGCCATCTGTTCTGCCCTGGCTGCCTCGGCCTTAC
CAGCTTTGGTGATGTCTAAAGGTCATCGTGTTGAGGAAGTTCCTGAACTGCCTTTGGTGGTTGAAGATAAAGTTGAAAGT
TATAAGAAGACCAAGGAGGCTGTTCAGCTGCTTAAGAAACTTAAAGCTTGGAATGACATCAAAAAGGTCTATGCCTCCCA
GAGAATGAGAGCTGGCAAGGGCAAAATGAGAAACCGACGGCGGATCCAGCGCAGGGGACCCTGCATTATCTATAATGAAG
ATAATGGAATCATCAAGGCCTTCAGAAACATCCCTGGTATTACTCTGCTTAATGTAAGCAAGCTGAACATTTTGAAACTT
GCTCCTGGTGGGCATGTGGGGCGTTTCTGCATTTGGACTGAAAGTGCTTTCCGGAAGTTGGATGAGTTGTATGGCACTTG
GCGTAAGGCTGCTTCCCTCAAGAGTAACTACAACCTCCCCATGCACAAGATGATGAACACAGACCTTAGCAGAATCTTGA
AAAGCCCAGAGATCCAAAGAGCCCTTCGAGCACCACGCAAGAAGATTCAGCGCAGAGTCTTGAAGAAGAATCCACTGAAG
AATCTGAGGATCATGTTGAAGCTGAACCCTTACGCAAAGACTATGCGTAGGAACACCATTCTCCGCCAGGCTAGGAATCA
CAAACTTCGAGTGAAAAAGCTGGAAGCCGCAGCTGCTGCACTGGCAGCCAAATCGGAGAAGATTGTTCCAGAGAAGGGGG
CTGGAGACAAAAAACCTGCAGTAGGCAAAAAAGGAAAGAAGCCTGTGGATGCCAAGAAGCTGAAGAAGCCTGCAGGGAAA
AAGGTGGTTACCAAGAAACCAGCAGAGAAGAAACCTACCACAGAAGAAAAAAAGTCTGCTGCATAA

Library Parental gene expression (RPM)
SRP017611_brain 247 .83 RPM
SRP017611_kidney 302 .58 RPM
SRP017611_liver 292 .01 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005211 possible_ortholog 2 retrogenes
retro_btau_101, retro_btau_610,
Canis familiaris ENSCAFG00000017309 possible_ortholog 1 retrogene
retro_cfam_72,
Choloepus hoffmanni ENSCHOG00000003008 possible_ortholog 6 retrogenes
retro_chof_1014, retro_chof_1496, retro_chof_2219, retro_chof_2616, retro_chof_455, retro_chof_476,
Callithrix jacchus ENSCJAG00000007491 possible_ortholog 2 retrogenes
retro_cjac_251, retro_cjac_945,
Cavia porcellus ENSCPOG00000003055 ortholog_one2many 1 retrogene
retro_cpor_370,
Dasypus novemcinctus ENSDNOG00000006693 possible_ortholog 3 retrogenes
retro_dnov_1028, retro_dnov_1152, retro_dnov_1931,
Equus caballus ENSECAG00000023179 possible_ortholog 1 retrogene
retro_ecab_428,
Echinops telfairi ENSETEG00000000337 possible_ortholog 3 retrogenes
retro_etel_1876, retro_etel_2195, retro_etel_226,
Felis catus ENSFCAG00000012293 possible_ortholog 4 retrogenes
retro_fcat_1136, retro_fcat_189, retro_fcat_505, retro_fcat_567,
Homo sapiens ENSG00000174444 possible_ortholog 5 retrogenes
retro_hsap_1306, retro_hsap_254, retro_hsap_2898, retro_hsap_4229, retro_hsap_471,
Gorilla gorilla ENSGGOG00000003695 possible_ortholog 4 retrogenes
retro_ggor_1023, retro_ggor_2008, retro_ggor_2831, retro_ggor_304,
Loxodonta africana ENSLAFG00000006494 possible_ortholog 3 retrogenes
retro_lafr_1076, retro_lafr_152, retro_lafr_960,
Microcebus murinus ENSMICG00000004419 possible_ortholog 6 retrogenes
retro_mmur_1050, retro_mmur_1330, retro_mmur_440, retro_mmur_562, retro_mmur_830, retro_mmur_852,
Myotis lucifugus ENSMLUG00000011809 possible_ortholog 2 retrogenes
retro_mluc_121, retro_mluc_198,
Macaca mulatta ENSMMUG00000016844 possible_ortholog 2 retrogenes
retro_mmul_2160, retro_mmul_649,
Monodelphis domestica ENSMODG00000009657 ortholog_one2many 2 retrogenes
retro_mdom_656, retro_mdom_944,
Mustela putorius furo ENSMPUG00000000337 possible_ortholog 3 retrogenes
retro_mputfur_1205, retro_mputfur_411, retro_mputfur_570,
Mus musculus ENSMUSG00000032399 ortholog_one2many 2 retrogenes
retro_mmus_2863, retro_mmus_495,
Nomascus leucogenys ENSNLEG00000012938 possible_ortholog 4 retrogenes
retro_nleu_1041, retro_nleu_1062, retro_nleu_2385, retro_nleu_887,
Oryctolagus cuniculus ENSOCUG00000008794 ortholog_one2many 3 retrogenes
retro_ocun_1134, retro_ocun_630, retro_ocun_631,
Ochotona princeps ENSOPRG00000007792 ortholog_one2many 1 retrogene
retro_opri_735,
Pongo abelii ENSPPYG00000006578 possible_ortholog 1 retrogene
retro_pabe_152,
Pan troglodytes ENSPTRG00000007195 possible_ortholog 6 retrogenes
retro_ptro_1512, retro_ptro_1959, retro_ptro_214, retro_ptro_2873, retro_ptro_353, retro_ptro_897,
Pteropus vampyrus ENSPVAG00000000068 possible_ortholog 18 retrogenes
retro_pvam_1222, retro_pvam_1342, retro_pvam_201, retro_pvam_202, retro_pvam_216, retro_pvam_236, retro_pvam_267, retro_pvam_399, retro_pvam_428, retro_pvam_430, retro_pvam_435, retro_pvam_466, retro_pvam_518, retro_pvam_736, retro_pvam_778, retro_pvam_819, retro_pvam_865, retro_pvam_955,
Sus scrofa ENSSSCG00000004945 possible_ortholog 2 retrogenes
retro_sscr_138, retro_sscr_885,
Ictidomys tridecemlineatus ENSSTOG00000009221 possible_ortholog 1 retrogene
retro_itri_437,
Tupaia belangeri ENSTBEG00000014392 possible_ortholog 9 retrogenes
retro_tbel_1701, retro_tbel_2186, retro_tbel_2649, retro_tbel_3302, retro_tbel_3577, retro_tbel_3624, retro_tbel_3938, retro_tbel_4340, retro_tbel_4402,
Tarsius syrichta ENSTSYG00000005588 possible_ortholog 1 retrogene
retro_tsyr_1144,
Tursiops truncatus ENSTTRG00000010206 possible_ortholog 7 retrogenes
retro_ttru_1130, retro_ttru_1399, retro_ttru_1713, retro_ttru_177, retro_ttru_789, retro_ttru_817, retro_ttru_964,
Vicugna pacos ENSVPAG00000006746 possible_ortholog 2 retrogenes
retro_vpac_143, retro_vpac_250,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_949 83.33 78.38
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2. retro_rnor_1192 85.39 51.54
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3. retro_rnor_1621 80.45 85.04
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4. retro_rnor_2061 67.96 96.91
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5. retro_rnor_2484 88.63 100.00
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Download FASTA sequences of all ENSRNOG00000009378 retrocopies