Parental gene:

RPL4, ENSOPRG00000007792

Aliases:None
Description:ribosomal protein L4 [Source:HGNC Symbol;Acc:10353]
Organism:Southern American pika (Ochotona princeps)
Coordinates:GeneScaffold_3880:89853..99750(-)


>ENSOPRG00000007792
ATGGCGTGTGCTCGCCCGCTGATCTCGGTGTACTCGGAGAAGGGGGAGTCTTCAGGCAAGAATGTCACGCTGCCCGCCGT
GTTCAAGGCCCCCATTCGCCCCGACATCGTAAACTTTGTTCACACGAACCTGCGCAAGAACAACCGGCAGCCCTATGCCG
TCAGTGAACTGGCAGGTCACCGTATTGAGGAAGTCCCCGAGCTCCCTCTGGTAGTTGAAGATAAAGTGGAAGGCTACAAG
AAGACCAAGGAGGCAGTCTTGCTTCTCAAGAAACTGAAGGCCTGGAATGATATCAAAAAGGTTTACGCCTCCCAGCGCAT
GAGGGCTGGCAAGGGCAAGATGAGAAACCGCAGGAGGATCCAGCGCCGTGGGCCCTGCATCATATACAATGAGGACAATG
GCATCATCAAGGCCTTCAGAAACATCCCAGGAATCACACTGCTCAACGTGAGCAAGCTGAACATTCTGAAGCTCGCTCCC
GGGGGCCACGTGGGGCGCTTCTGCATCTGGACCGAGAGCGCCTTCCGCAAGCTGGATGACTTGTACGGCACATGGCGCAA
AGCTGCCTCCCTAAAGAGTAACTACAACCTGCCCATGCACAAGATGCTCAACACAGACCTCAGCCGGATCCTGAAGAGCC
CAGAGATCCAGAGAGCCCTGCGGGCACCACGCAAGAAGATTCACCGCAGAGTCCTGAAGAAGAACCCGCTGAAGAACCTC
AGGATCATGCTGAAGCTGAACCCGTACGCCAAGACCATGCGGCGGAACACCATCCTGCGGCAGGCCAGGAATCACAAACT
GCGTGTGGAGAGGGCGGCCGCAGTCCTGGCCGCCAAATCCGACAAGAAGGAGGGTGCGGACAAGAAGCCTGTGGTGCTGA
AGAAGGTCAAGAAATCGAGGGCTGTGGGCGTCAAGCCGAAGAAGCCAGTGGTGGGGAAGAAGGCGGCCACGGCCAAGAAA
GCAGCGGGTGCCAAGAAACCTGCTGACAAGAAAACGGCCCCAGAAGACAAGAAGTCCGCCGCATAA

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005211 possible_ortholog 2 retrogenes
retro_btau_101, retro_btau_610,
Canis familiaris ENSCAFG00000017309 possible_ortholog 1 retrogene
retro_cfam_72,
Callithrix jacchus ENSCJAG00000007491 possible_ortholog 2 retrogenes
retro_cjac_251, retro_cjac_945,
Cavia porcellus ENSCPOG00000003055 ortholog_one2one 1 retrogene
retro_cpor_370,
Echinops telfairi ENSETEG00000000337 possible_ortholog 3 retrogenes
retro_etel_1876, retro_etel_2195, retro_etel_226,
Felis catus ENSFCAG00000012293 possible_ortholog 4 retrogenes
retro_fcat_1136, retro_fcat_189, retro_fcat_505, retro_fcat_567,
Gorilla gorilla ENSGGOG00000003695 possible_ortholog 4 retrogenes
retro_ggor_1023, retro_ggor_2008, retro_ggor_2831, retro_ggor_304,
Myotis lucifugus ENSMLUG00000011809 possible_ortholog 2 retrogenes
retro_mluc_121, retro_mluc_198,
Macaca mulatta ENSMMUG00000016844 possible_ortholog 2 retrogenes
retro_mmul_2160, retro_mmul_649,
Monodelphis domestica ENSMODG00000009657 ortholog_one2one 2 retrogenes
retro_mdom_656, retro_mdom_944,
Mustela putorius furo ENSMPUG00000000337 possible_ortholog 3 retrogenes
retro_mputfur_1205, retro_mputfur_411, retro_mputfur_570,
Mus musculus ENSMUSG00000032399 ortholog_one2one 2 retrogenes
retro_mmus_2863, retro_mmus_495,
Nomascus leucogenys ENSNLEG00000012938 possible_ortholog 4 retrogenes
retro_nleu_1041, retro_nleu_1062, retro_nleu_2385, retro_nleu_887,
Oryctolagus cuniculus ENSOCUG00000008794 ortholog_one2one 3 retrogenes
retro_ocun_1134, retro_ocun_630, retro_ocun_631,
Pongo abelii ENSPPYG00000006578 possible_ortholog 1 retrogene
retro_pabe_152,
Rattus norvegicus ENSRNOG00000009378 ortholog_one2many 5 retrogenes
retro_rnor_1192, retro_rnor_1621, retro_rnor_2061, retro_rnor_2484, retro_rnor_949,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_opri_735 54.75 51.61
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Download FASTA sequences of all ENSOPRG00000007792 retrocopies