Parental gene:

Prdx6, ENSRNOG00000002896

Aliases:None
Description:Peroxiredoxin-6 [Source:UniProtKB/Swiss-Prot;Acc:O35244]
Organism:Rat (Rattus norvegicus)
Coordinates:13:83972033..83983136(-)


>ENSRNOG00000002896
ATGCCCGGAGGGCTGCTTCTCGGGGACGAAGCCCCCAACTTTGAGGCCAATACCACCATCGGCCACATCCGCTTCCACGA
TTTCCTAGGAGATTCATGGGGCATTCTCTTTTCCCACCCACGGGACTTTACCCCAGTGTGCACCACAGAACTTGGCAGAG
CTGCAAAGCTGGCGCCAGAGTTTGCCAAGAGGAATGTTAAGTTGATTGCTCTTTCAATAGACTCTGTTGAGGACCATTTT
GCCTGGAGCAAGGACATCAATGCTTACAATGGTGCAGCACCCACAGAAAAGCTACCATTTCCCATCATCGACGATAAGGA
CAGGGACCTTGCCATCCTGTTGGGCATGTTGGATCCAGCAGAGAAGGATGAAAAAGGCATGCCCGTGACAGCCCGTGTGG
TATTCATTTTTGGCCCTGACAAGAAACTAAAACTGTCCATCCTCTACCCAGCCACCACGGGCAGAAACTTTGATGAGATT
CTCAGAGTGGTTGACTCCCTCCAGCTGACAGCATCAAATCCAGTTGCCACTCCAGTTGACTGGAAGAAGGGAGAGAGTGT
GATGGTCCTTCCCACCCTCCCTGAAGAGGAAGCCAAACAACTTTTCCCTAAAGGAGTCTTCACCAAAGAGCTCCCATCTG
GCAAGAAATACCTCCGTTATACGCCCCAGCCTTAA

Library Parental gene expression (RPM)
SRP017611_brain 116 .04 RPM
SRP017611_kidney 250 .52 RPM
SRP017611_liver 138 .37 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015560 ortholog_one2one 1 retrogene
retro_amel_493,
Bos taurus ENSBTAG00000004855 ortholog_one2one 2 retrogenes
retro_btau_1325, retro_btau_1477,
Canis familiaris ENSCAFG00000014579 ortholog_one2one 1 retrogene
retro_cfam_492,
Choloepus hoffmanni ENSCHOG00000011367 ortholog_one2one 6 retrogenes
retro_chof_1143, retro_chof_1361, retro_chof_1364, retro_chof_225, retro_chof_2483, retro_chof_2598,
Callithrix jacchus ENSCJAG00000009355 ortholog_one2many 6 retrogenes
retro_cjac_1903, retro_cjac_2188, retro_cjac_3008, retro_cjac_3239, retro_cjac_3830, retro_cjac_4000,
Cavia porcellus ENSCPOG00000011091 ortholog_one2one 1 retrogene
retro_cpor_623,
Equus caballus ENSECAG00000022468 ortholog_one2one 1 retrogene
retro_ecab_215,
Erinaceus europaeus ENSEEUG00000004040 ortholog_one2one 1 retrogene
retro_eeur_475,
Homo sapiens ENSG00000117592 ortholog_one2one 2 retrogenes
retro_hsap_1046, retro_hsap_3017,
Gorilla gorilla ENSGGOG00000026357 ortholog_one2many 1 retrogene
retro_ggor_2086,
Macaca mulatta ENSMMUG00000008776 ortholog_one2one 1 retrogene
retro_mmul_1928,
Monodelphis domestica ENSMODG00000004032 ortholog_one2one 2 retrogenes
retro_mdom_462, retro_mdom_661,
Mustela putorius furo ENSMPUG00000004648 ortholog_one2one 1 retrogene
retro_mputfur_1328,
Mus musculus ENSMUSG00000026701 ortholog_one2many 2 retrogenes
retro_mmus_181, retro_mmus_2334,
Nomascus leucogenys ENSNLEG00000015278 ortholog_one2one 2 retrogenes
retro_nleu_2244, retro_nleu_917,
Pan troglodytes ENSPTRG00000042455 ortholog_one2many 1 retrogene
retro_ptro_70,
Pteropus vampyrus ENSPVAG00000002596 ortholog_one2one 2 retrogenes
retro_pvam_1389, retro_pvam_805,
Sarcophilus harrisii ENSSHAG00000003248 ortholog_one2one 1 retrogene
retro_shar_478,
Tarsius syrichta ENSTSYG00000010073 ortholog_one2one 2 retrogenes
retro_tsyr_1395, retro_tsyr_193,
Tursiops truncatus ENSTTRG00000008478 ortholog_one2one 1 retrogene
retro_ttru_1274,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_754 93.97 51.79
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2. retro_rnor_806 80.19 93.30
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3. retro_rnor_2084 74.57 76.79
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Download FASTA sequences of all ENSRNOG00000002896 retrocopies