Parental gene:

SSU72, ENSPTRG00000000034

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:1:1456941..1491733(-)


>ENSPTRG00000000034
ATGCCGTCGTCCCCGCTGCGGGTGGCGGTGGTGTGCTCGAGCAACCAGAACCGGAGCATGGAGGCGCACAACATCCTCAG
CAAACGGGGATTCAGCGTCCGATCCTTTGGAACAGGGACTCACGTGAAGCTTCCAGGACCAGCTCCCGACAAGCCCAATG
TTTATGATTTCAAAACCACATATGACCAGATGTACAATGATCTTCTTAGGAAAGACAAAGAACTCTATACACAGAATGGG
ATTTTACATATGCTGGACAGAAATAAGAGAATCAAGCCCCGGCCAGAAAGATTCCAGAACTGCAAAGACCTGTTTGATCT
GATCCTCACTTGCGAAGAGAGAGTGTATGACCAGGTGGTGGAAGATCTGAATTCCAGAGAACAGGAGACCTGCCAGCCCG
TGCACGTGGTCAATGTGGACATCCAGGACAACCACGAGGAGGCCACCCTGGGGGCGTTTCTCATCTGTGAGCTCTGCCAG
TGTATCCAGCACACGGAAGACATGGAGAACGAGATCGACGAGCTGCTGCAGGAGTTCGAGGAGAAGAGTGGCCGCACCTT
TCTGCACACCGTCTGCTTCTACTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 79 .99 RPM
SRP007412_cerebellum 89 .69 RPM
SRP007412_heart 50 .83 RPM
SRP007412_kidney 102 .20 RPM
SRP007412_liver 70 .61 RPM
SRP007412_testis 34 .46 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013736 possible_ortholog 3 retrogenes
retro_amel_1930, retro_amel_292, retro_amel_84,
Canis familiaris ENSCAFG00000019254 ortholog_one2one 2 retrogenes
retro_cfam_185, retro_cfam_42,
Callithrix jacchus ENSCJAG00000010957 ortholog_one2one 3 retrogenes
retro_cjac_1640, retro_cjac_2335, retro_cjac_37,
Cavia porcellus ENSCPOG00000002238 ortholog_one2one 2 retrogenes
retro_cpor_83, retro_cpor_909,
Homo sapiens ENSG00000160075 ortholog_one2one 8 retrogenes
retro_hsap_3778, retro_hsap_4741, retro_hsap_747, retro_hsap_748, retro_hsap_749, retro_hsap_841, retro_hsap_842, retro_hsap_843,
Gorilla gorilla ENSGGOG00000004421 ortholog_one2one 1 retrogene
retro_ggor_206,
Loxodonta africana ENSLAFG00000002076 ortholog_one2one 4 retrogenes
retro_lafr_1153, retro_lafr_1154, retro_lafr_1155, retro_lafr_400,
Macropus eugenii ENSMEUG00000015170 ortholog_one2one 1 retrogene
retro_meug_1253,
Myotis lucifugus ENSMLUG00000016517 ortholog_one2one 2 retrogenes
retro_mluc_292, retro_mluc_371,
Macaca mulatta ENSMMUG00000001551 ortholog_one2one 1 retrogene
retro_mmul_159,
Monodelphis domestica ENSMODG00000006616 ortholog_one2one 3 retrogenes
retro_mdom_16, retro_mdom_1997, retro_mdom_487,
Mustela putorius furo ENSMPUG00000014394 possible_ortholog 2 retrogenes
retro_mputfur_108, retro_mputfur_1408,
Mus musculus ENSMUSG00000029038 ortholog_one2one 1 retrogene
retro_mmus_1317,
Otolemur garnettii ENSOGAG00000024430 ortholog_one2one 2 retrogenes
retro_ogar_124, retro_ogar_13,
Pongo abelii ENSPPYG00000002000 ortholog_one2one 1 retrogene
retro_pabe_53,
Pteropus vampyrus ENSPVAG00000017695 ortholog_one2one 4 retrogenes
retro_pvam_11, retro_pvam_1151, retro_pvam_272, retro_pvam_767,
Rattus norvegicus ENSRNOG00000017829 ortholog_one2one 2 retrogenes
retro_rnor_1169, retro_rnor_2766,
Sus scrofa ENSSSCG00000003348 ortholog_one2one 2 retrogenes
retro_sscr_1179, retro_sscr_38,
Ictidomys tridecemlineatus ENSSTOG00000002960 ortholog_one2one 4 retrogenes
retro_itri_1055, retro_itri_1352, retro_itri_1496, retro_itri_99,
Tursiops truncatus ENSTTRG00000017051 ortholog_one2one 2 retrogenes
retro_ttru_1264, retro_ttru_1265,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_531 71.65 100.00
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2. retro_ptro_532 71.13 100.00
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3. retro_ptro_2560 69.59 100.00
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4. retro_ptro_2963 71.13 100.00
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5. retro_ptro_3016 71.13 100.00
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6. retro_ptro_3017 71.13 100.00
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7. retro_ptro_3018 71.13 100.00
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8. retro_ptro_3019 66.13 95.36
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9. retro_ptro_3020 71.65 100.00
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10. retro_ptro_3021 71.65 100.00
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11. retro_ptro_3022 71.13 100.00
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12. retro_ptro_3023 69.27 91.75
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13. retro_ptro_3024 71.13 100.00
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14. retro_ptro_3025 71.13 100.00
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15. retro_ptro_3026 71.65 100.00
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16. retro_ptro_3156 77.84 100.00
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Download FASTA sequences of all ENSPTRG00000000034 retrocopies