Parental gene:

FUNDC1, ENSPPYG00000020268

Aliases:None
Description:FUN14 domain containing 1 [Source:HGNC Symbol;Acc:28746]
Organism:Orangutan (Pongo abelii)
Coordinates:X:45167959..45187189(-)


>ENSPPYG00000020268
ATGGCGACCCGGAACCCCCCTCCCCAAGACTATGAAAGTGATGACGACTCTTATGAAGTGTTGGATTTAACTGAGTATGC
AAGAAGACACCAGTGGTGGAATCGAGTGTTTGGCCACAGTTCGGGACCTATGGTAGAAAAATACTCAGTAGCTACCCAGA
TTGTAATGGGTGGCGTTACTGGCTGGTGTGCAGGATTTCTGTTCCAGAAAGTTGGAAAACTTGCAGCAACTGCAGTAGGT
GGTGGCTTTCTTCTTCTTCAGATTGCTAGTCATAGTGGCTATGTGCAGATTGACTGGAAGAGAGTTGAAAAAGATGTAAA
TAAAGCAAAAAGACAGATTAAGAAACGAGCGAACAAAGCAGCACCTGAAATCAACAATTTAATTGAAGAAGCAACAGAAT
TTATCAAGCAGAACATTGTGATATCCAGTGGATTTGTGGGAGGCTTTTTGCTCGGACTTGCATCTTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 10 .89 RPM
SRP007412_cerebellum 16 .54 RPM
SRP007412_heart 7 .25 RPM
SRP007412_kidney 6 .60 RPM
SRP007412_liver 4 .80 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000010876 ortholog_one2one 1 retrogene
retro_cjac_896,
Cavia porcellus ENSCPOG00000012962 ortholog_one2one 2 retrogenes
retro_cpor_507, retro_cpor_508,
Echinops telfairi ENSETEG00000012763 ortholog_one2one 3 retrogenes
retro_etel_1614, retro_etel_697, retro_etel_852,
Homo sapiens ENSG00000069509 ortholog_one2one 1 retrogene
retro_hsap_936,
Gorilla gorilla ENSGGOG00000023311 ortholog_one2one 1 retrogene
retro_ggor_755,
Latimeria chalumnae ENSLACG00000010215 ortholog_one2one 1 retrogene
retro_lcha_74,
Macropus eugenii ENSMEUG00000006795 ortholog_one2one 5 retrogenes
retro_meug_1597, retro_meug_2127, retro_meug_232, retro_meug_415, retro_meug_994,
Microcebus murinus ENSMICG00000000450 ortholog_one2one 2 retrogenes
retro_mmur_1189, retro_mmur_1461,
Macaca mulatta ENSMMUG00000003505 ortholog_one2many 1 retrogene
retro_mmul_38,
Monodelphis domestica ENSMODG00000021088 ortholog_one2one 3 retrogenes
retro_mdom_1262, retro_mdom_769, retro_mdom_917,
Nomascus leucogenys ENSNLEG00000002513 ortholog_one2one 2 retrogenes
retro_nleu_2760, retro_nleu_294,
Oryctolagus cuniculus ENSOCUG00000029753 ortholog_one2many 5 retrogenes
retro_ocun_1008, retro_ocun_1376, retro_ocun_1567, retro_ocun_27, retro_ocun_314,
Pongo abelii ENSPPYG00000020897 within_species_paralog 4 retrogenes
retro_pabe_1884, retro_pabe_2646, retro_pabe_2916, retro_pabe_49,
Pelodiscus sinensis ENSPSIG00000013793 ortholog_one2one 1 retrogene
retro_psin_30,
Pan troglodytes ENSPTRG00000021821 ortholog_one2one 1 retrogene
retro_ptro_648,
Rattus norvegicus ENSRNOG00000003470 ortholog_one2one 1 retrogene
retro_rnor_2644,
Sarcophilus harrisii ENSSHAG00000000501 ortholog_one2one 1 retrogene
retro_shar_222,
Tarsius syrichta ENSTSYG00000009139 ortholog_one2one 1 retrogene
retro_tsyr_1522,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_806 72.85 97.42
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2. retro_pabe_829 74.52 100.00
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Download FASTA sequences of all ENSPPYG00000020268 retrocopies