Parental gene:

BOD1, ENSPPYG00000016057

Aliases:None
Description:biorientation of chromosomes in cell division 1 [Source:HGNC Symbol;Acc:25114]
Organism:Orangutan (Pongo abelii)
Coordinates:5:176287639..176297378(-)


>ENSPPYG00000016057
ATGCAAAGGCCAACGGTGACGCCATCTGGGGCGCGCCTGGAATCGAGCAGGCCGTTTCTGCCGCGTCCACCACAACCTCT
GCGGTATCAGAGGGGGCCTTCGCCGCCGCCGCCCCCACCACCGCCCCCGCCGCCATCGCCCCCGCCGCCGCCACCACCAC
CACCGTCACCTCCGCCGCTGCCGCCTTGGGGCCCTCCTCCTTCACCGCCCCCTTCACCACCTCTACACGTTTTAGGCCTT
CTGTCCTGGAGAAGAAGCTATAGTCGGTCTCCCTTGTGGGCCCGGGGCGCAGCCATGGCGGACGGCGGCGGCGGCGGGGG
AACTGGCGCGGTGGGCGGCGGCGGAACTGGCCAGGCCTCTGCCGGGGCAGCGACTGGCGCTACTGGGGCCAGCGGGGGCG
GTGGCTCCATCAACCCGGCCTCGCTGCCTCCCGGCGACCCGCAGCTCATCGCTCTCATCGTGGAGCAGCTCAAAAGCCGG
GGCCTTTTTGACAGCTTCCGCCGGGACTGCCTGGCCGACGTGGACACCAAGCCAGCTTACCAAAACCTGAGGCAGAAAGT
GGATAATTTTGTGTCAACACATCTGGACAAGCAGGAATGGAATCCTACAATGAACAAAAACCAATTGCGAAATGGTCTGA
GGCAGAGTGTGGTTCAGTCAGGGATGTTGGAAGCTGGAGTAGACAGGATTATTTCTCAGGTGGTGGATCCAAAACTTAAC
CACATCTTCAGGCCACAAATAGAACGAGCAATTCATGAGTTCCTGGCAGCCCAGAAAAAAGCAGCTGTGCCAGCACCCCC
TCCAGAGCCCGAAGGCCAGGACCCTCCAGCTCCATCTCAGGACACTTCGTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 30 .80 RPM
SRP007412_cerebellum 40 .74 RPM
SRP007412_heart 12 .46 RPM
SRP007412_kidney 18 .50 RPM
SRP007412_liver 15 .76 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000034598 ortholog_one2one 1 retrogene
retro_btau_663,
Canis familiaris ENSCAFG00000016776 ortholog_one2one 1 retrogene
retro_cfam_1374,
Callithrix jacchus ENSCJAG00000031971 ortholog_one2one 4 retrogenes
retro_cjac_1154, retro_cjac_1515, retro_cjac_1536, retro_cjac_953,
Homo sapiens ENSG00000145919 ortholog_one2one 3 retrogenes
retro_hsap_102, retro_hsap_1867, retro_hsap_993,
Gorilla gorilla ENSGGOG00000010925 ortholog_one2one 2 retrogenes
retro_ggor_1365, retro_ggor_794,
Microcebus murinus ENSMICG00000002626 ortholog_one2one 1 retrogene
retro_mmur_1126,
Macaca mulatta ENSMMUG00000013793 ortholog_one2one 2 retrogenes
retro_mmul_803, retro_mmul_869,
Mus musculus ENSMUSG00000044502 ortholog_one2one 1 retrogene
retro_mmus_3661,
Nomascus leucogenys ENSNLEG00000000476 ortholog_one2one 1 retrogene
retro_nleu_1224,
Oryctolagus cuniculus ENSOCUG00000014283 ortholog_one2many 1 retrogene
retro_ocun_1071,
Otolemur garnettii ENSOGAG00000001107 ortholog_one2one 3 retrogenes
retro_ogar_1477, retro_ogar_2663, retro_ogar_3112,
Pan troglodytes ENSPTRG00000017544 ortholog_one2one 2 retrogenes
retro_ptro_1282, retro_ptro_757,
Ictidomys tridecemlineatus ENSSTOG00000013505 ortholog_one2one 1 retrogene
retro_itri_1164,
Tupaia belangeri ENSTBEG00000014046 ortholog_one2one 1 retrogene
retro_tbel_3451,
Tarsius syrichta ENSTSYG00000007617 ortholog_one2one 1 retrogene
retro_tsyr_818,
Tursiops truncatus ENSTTRG00000000384 ortholog_one2one 2 retrogenes
retro_ttru_1004, retro_ttru_457,
Vicugna pacos ENSVPAG00000004260 ortholog_one2one 1 retrogene
retro_vpac_452,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1567 79.91 80.57
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2. retro_pabe_1587 66.23 53.71
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Download FASTA sequences of all ENSPPYG00000016057 retrocopies