Parental gene:

CHMP1A, ENSPPYG00000007667

Aliases:CHMP1A, PCOLN3
Description:Charged multivesicular body protein 1a [Source:UniProtKB/Swiss-Prot;Acc:Q5R605]
Organism:Orangutan (Pongo abelii)
Coordinates:16:77303942..77315702(-)


>ENSPPYG00000007667
ATGGACGATACCCTGTTCCAGTTGAAGTTCACGGCGAAGCAGCTGGAGAAGCTGGCCAAGAAGGCGGAGAAGGACTCCAA
GGCGGAGCAGGCCAAAGTGAAGAAGGCCCTTCTGCAGAAAAATGTAGAGTGTGCCCGTGTGTATGCCGAGAACGCCATCC
GCAAGAAGAACGAAGGTGTGAACTGGCTTCGGATGGCGTCCCGCGTAGACGCGGTGGCCTCCAAGGTGCAGACGGCTGTG
ACCATGAAGGGGGTGACCAAGAACATGGCCCAGGTGACCAAAGCCCTGGACAAGGCCCTGAGCACCATGGACCTGCAGAA
GGTCTCCTCAGTGATGGACAGGTTCGAGCAGCAGGTGCAGAACCTGGACGTCCATACATCGGTGATGGAGGACTCCATGA
GCTCGGCCACCACCCTGACCACGCCACAGGAACAGGTGGACAGCCTCATCATGCAGATTGCCGAGGAGAATGGCCTGGAG
GTGCTGGACCAGCTCAGCCAGCTGCCCGAGGGCGCCTCTGCCGTGGGTGAGAGCTCTGTGCGCAGCCAGGAGGACCAGCT
TTCACGGAGGTTGGCCGCCTTGAGGAACTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 42 .79 RPM
SRP007412_cerebellum 30 .28 RPM
SRP007412_heart 12 .19 RPM
SRP007412_kidney 63 .91 RPM
SRP007412_liver 29 .32 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001216 ortholog_one2one 1 retrogene
retro_amel_1749,
Bos taurus ENSBTAG00000033331 ortholog_one2one 1 retrogene
retro_btau_1048,
Canis familiaris ENSCAFG00000019822 ortholog_one2one 1 retrogene
retro_cfam_1866,
Callithrix jacchus ENSCJAG00000010826 ortholog_one2one 1 retrogene
retro_cjac_1147,
Homo sapiens ENSG00000131165 ortholog_one2one 2 retrogenes
retro_hsap_359, retro_hsap_75,
Macaca mulatta ENSMMUG00000014909 ortholog_one2one 3 retrogenes
retro_mmul_1325, retro_mmul_476, retro_mmul_706,
Mustela putorius furo ENSMPUG00000007281 ortholog_one2one 1 retrogene
retro_mputfur_383,
Mus musculus ENSMUSG00000000743 ortholog_one2one 1 retrogene
retro_mmus_2260,
Oryctolagus cuniculus ENSOCUG00000023371 ortholog_one2one 1 retrogene
retro_ocun_1508,
Otolemur garnettii ENSOGAG00000004883 ortholog_one2many 1 retrogene
retro_ogar_170,
Pongo abelii ENSPPYG00000020505 within_species_paralog 1 retrogene
retro_pabe_1581,
Pan troglodytes ENSPTRG00000008483 ortholog_one2one 2 retrogenes
retro_ptro_1278, retro_ptro_283,
Ictidomys tridecemlineatus ENSSTOG00000023813 ortholog_one2one 1 retrogene
retro_itri_1311,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_344 71.58 92.35
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Download FASTA sequences of all ENSPPYG00000007667 retrocopies