Parental gene:

SF3B4, ENSOCUG00000004614

Aliases:None
Description:splicing factor 3b, subunit 4, 49kDa [Source:HGNC Symbol;Acc:10771]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:13:42105173..42110263(+)


>ENSOCUG00000004614
ATGGCTGCCGGGCCGATCTCCGAGCGGAACCAGGATGCTACTGTGTACGTGGGGGGCCTGGACGAGAAGGTTAGCGAACC
TCTGCTGTGGGAGCTCTTCCTGCAGGCAGGACCGGTGGTCAACACTCACATGCCGAAGGACAGAGTCACTGGCCAGCACC
AAGGCTATGGCTTTGTGGAATTCTTGAGTGAAGAAGATGCTGACTATGCCATTAAGATCATGAACATGATCAAACTCTAT
GGGAAGCCAATACGAGTGAACAAGGCATCAGCTCACAACAAAAACCTGGATGTCGGGGCCAACATTTTCATCGGGAACCT
GGACCCGGAGATTGACGAGAAGCTGCTTTACGATACTTTTAGCGCCTTTGGGGTCATCTTACAAACCCCCAAGATCATGC
GGGACCCTGACACAGGCAACTCCAAAGGTTATGCCTTTATTAATTTTGCTTCATTTGATGCCTCGGATGCAGCAATTGAG
GCCATGAATGGGCAGTACCTCTGTAACCGCCCCATCACCGTGTCTTATGCCTTCAAGAAGGACTCCAAGGGTGAGCGCCA
TGGCTCCGCAGCTGAACGACTTCTGGCAGCCCAGAACCCACTCTCCCAGGCTGATCGCCCACATCAGCTGTTTGCAGATG
CACCCCCTCCACCCTCTGCTCCCAACCCTGTGGTATCATCACTGGGGTCTGGGCTTCCTCCACCAGGCATGCCTCCTCCT
GGCTCTTTCCCACCCCCAGTGCCGCCTCCTGGAGCCCTCCCACCTGGAATACCTCCAGCCATGCCCCCCCCACCAATGCC
TCCTGGGGCTGGAGGACATGGCCCTCCATCAGCAGGCACCCCGGGGGCTGGACATCCTGGTCATGGACACTCACATCCTC
ACCCCTTCCCACCAGGTGGCATGCCCCATCCAGGGATGTCTCAGATGCAGCTGGCCCACCATGGCCCTCATGGCTTAGGA
CACCCCCATGCTGGGCCCCCAGGCTCTGGGGGACAGCCACCACCACGCCCACCTCCTGGAATGCCTCATCCTGGACCTCC
TCCAATGGGCATGCCCCCCAGAGGACCTCCGTTTGGATCTCCCATGGGTCACCCAGGCCCTATGCCTCCACATGGTATGC
GAGGACCCCCTCCACTGATGCCGCCTCATGGGTACACTGGTCCTCCACGGCCCCCGCCCTATGGCTACCAGCGGGGCCCC
CTTCCTCCACCCAGACCCACTCCCCGGCCTCCAGTTCCCCCTCGAGGCCCACTTCGGGGCCCTCTTCCTCAATAA

Library Parental gene expression (RPM)
SRP017611_brain 24 .78 RPM
SRP017611_kidney 18 .14 RPM
SRP017611_liver 7 .40 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000012495 ortholog_one2one 2 retrogenes
retro_btau_1385, retro_btau_592,
Canis familiaris ENSCAFG00000011617 ortholog_one2one 3 retrogenes
retro_cfam_585, retro_cfam_711, retro_cfam_729,
Callithrix jacchus ENSCJAG00000000793 ortholog_one2one 3 retrogenes
retro_cjac_1297, retro_cjac_1909, retro_cjac_638,
Cavia porcellus ENSCPOG00000008267 ortholog_one2one 1 retrogene
retro_cpor_234,
Echinops telfairi ENSETEG00000008963 ortholog_one2one 1 retrogene
retro_etel_1310,
Homo sapiens ENSG00000143368 ortholog_one2one 1 retrogene
retro_hsap_1356,
Gorilla gorilla ENSGGOG00000004761 ortholog_one2one 1 retrogene
retro_ggor_1056,
Macaca mulatta ENSMMUG00000007256 ortholog_one2one 1 retrogene
retro_mmul_2191,
Mustela putorius furo ENSMPUG00000005563 ortholog_one2one 2 retrogenes
retro_mputfur_1105, retro_mputfur_648,
Oryctolagus cuniculus ENSOCUG00000003342 within_species_paralog 1 retrogene
retro_ocun_924,
Pongo abelii ENSPPYG00000000912 ortholog_one2one 1 retrogene
retro_pabe_1124,
Pan troglodytes ENSPTRG00000001243 ortholog_one2one 1 retrogene
retro_ptro_930,
Pteropus vampyrus ENSPVAG00000014171 ortholog_one2one 1 retrogene
retro_pvam_931,
Rattus norvegicus ENSRNOG00000021181 ortholog_one2one 1 retrogene
retro_rnor_2350,
Ictidomys tridecemlineatus ENSSTOG00000000684 ortholog_one2one 2 retrogenes
retro_itri_1153, retro_itri_487,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_1239 98.13 100.00
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Download FASTA sequences of all ENSOCUG00000004614 retrocopies