Parental gene:

SF3B4, ENSCJAG00000000793

Aliases:None
Description:splicing factor 3b, subunit 4, 49kDa [Source:HGNC Symbol;Acc:10771]
Organism:Marmoset (Callithrix jacchus)
Coordinates:18:3887766..3894462(-)


>ENSCJAG00000000793
ATGGCTGCCGGGCCGATCTCCGAGCGGAACCAGGATGCCACTGTGTACGTCGGGGGCCTGGATGAGAAGGTTAGTGAACC
GCTGCTGTGGGAACTGTTTCTCCAGGCTGGACCGGTAGTCAACACCCACATGCCAAAGGATAGAGTCACTGGCCAGCACC
AAGGCTATGGCTTTGTGGAATTCTTGAGTGAGGAAGATGCAGACTATGCCATTAAGATCATGAACATGATCAAACTCTAT
GGGAAGCCAATACGGGTGAACAAGGCATCAGCTCACAACAAAAACCTGGATGTAGGGGCCAACATTTTCATTGGCAACCT
GGACCCTGAGATTGATGAGAAGTTGCTTTATGATACTTTCAGCGCCTTTGGGGTCATCTTACAAACCCCTAAGATTATGC
GGGACCCTGACACAGGCAACTCCAAAGGTTATGCCTTTATTAATTTTGCTTCATTTGATGCTTCGGATGCAGCAATTGAA
GCCATGAATGGGCAGTACCTCTGTAACCGCCCTATCACTGTATCTTACGCCTTCAAGAAGGACTCCAAGGGTGAGCGCCA
TGGCTCAGCAGCTGAACGACTTTTGGCAGCTCAGAACCCACTCTCCCAGGCTGACCGTCCTCATCAGCTGTTTGCAGATG
CGCCTCCTCCACCCTCTGCCCCCAATCCTGTGGTATCATCACTGGGGTCTGGGCTTCCTCCACCAGGCATGCCTCCTCCT
GGCTCCTTCCCACCCCCAGTGCCGCCTCCTGGAGCCCTCCCACCTGGGATACCTCCAGCCATGCCCCCACCACCTATGCC
GCCTGGGGCTGCAGGACACGGCCCCCCGTCGGCAGGAACCCCAGGGGCAGGACATCCTGGTCATGGACACTCACATCCTC
ATCCATTCCCACCAGGTGGGATGCCCCATCCAGGGATGACTCAGATGCAGCTGGCACACCATGGCCCTCATGGCTTGGGA
CATCCCCATGCTGGACCCCCAGGCTCTGGGGGGCAGCCACCGCCCCGACCACCACCTGGAATGCCTCATCCTGGACCTCC
TCCAATGGGCATGCCCCCCCGAGGGCCTCCATTCGGATCTCCCATGGGTCACCCAGGTCCTATGCCTCCACATGGTATGC
GTGGACCTCCTCCACTGATGCCCCCCCATGGATACACTGGCCCTCCACGACCCCCACCCTATGGCTACCAGCGGGGGCCT
CTCCCTCCACCCAGACCCACTCCCCGGCCACCAGTTCCCCCTCGAGGCCCGCTTCGGGGCCCTCTCCCTCAGTAA

Library Parental gene expression (RPM)
SRP051959_colon 3 .93 RPM
SRP051959_heart 3 .07 RPM
SRP051959_kidney 4 .13 RPM
SRP051959_liver 2 .49 RPM
SRP051959_lung 5 .08 RPM
SRP051959_lymph_node 5 .14 RPM
SRP051959_skeletal_muscle 2 .51 RPM
SRP051959_spleen 3 .97 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000012495 ortholog_one2one 2 retrogenes
retro_btau_1385, retro_btau_592,
Canis familiaris ENSCAFG00000011617 ortholog_one2one 3 retrogenes
retro_cfam_585, retro_cfam_711, retro_cfam_729,
Cavia porcellus ENSCPOG00000008267 ortholog_one2one 1 retrogene
retro_cpor_234,
Echinops telfairi ENSETEG00000008963 ortholog_one2one 1 retrogene
retro_etel_1310,
Homo sapiens ENSG00000143368 ortholog_one2one 1 retrogene
retro_hsap_1356,
Gorilla gorilla ENSGGOG00000004761 ortholog_one2one 1 retrogene
retro_ggor_1056,
Macaca mulatta ENSMMUG00000007256 ortholog_one2one 1 retrogene
retro_mmul_2191,
Mustela putorius furo ENSMPUG00000005563 ortholog_one2one 2 retrogenes
retro_mputfur_1105, retro_mputfur_648,
Oryctolagus cuniculus ENSOCUG00000004614 ortholog_one2one 1 retrogene
retro_ocun_1239,
Pongo abelii ENSPPYG00000000912 ortholog_one2one 1 retrogene
retro_pabe_1124,
Pan troglodytes ENSPTRG00000001243 ortholog_one2one 1 retrogene
retro_ptro_930,
Pteropus vampyrus ENSPVAG00000014171 ortholog_one2one 1 retrogene
retro_pvam_931,
Rattus norvegicus ENSRNOG00000021181 ortholog_one2one 1 retrogene
retro_rnor_2350,
Ictidomys tridecemlineatus ENSSTOG00000000684 ortholog_one2one 2 retrogenes
retro_itri_1153, retro_itri_487,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_638 96.00 100.00
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2. retro_cjac_1297 94.56 55.19
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3. retro_cjac_1909 78.95 93.63
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Download FASTA sequences of all ENSCJAG00000000793 retrocopies