Parental gene:

SF3B4, ENSPPYG00000000912

Aliases:None
Description:splicing factor 3b, subunit 4, 49kDa [Source:HGNC Symbol;Acc:10771]
Organism:Orangutan (Pongo abelii)
Coordinates:1:101707556..101712675(+)


>ENSPPYG00000000912
ATGGCTGCCGGGCCCATCTCCGAGCGGAACCAGGATGCCACTGTGTACGTGGGGGGCCTGGATGAGAAGGTTAGTGAACC
GCTGCTGTGGGAACTGTTTCTCCAGGCTGGACCAGTAGTCAACACCCACATGCCAAAGGATAGAGTCACTGGCCAGCACC
AAGGCATGCCTCCTCCTGGCTCCTTCCCACCCCCAGTGCCACCTCCTGGAGCCCTCCCACCTGGGATACCCCCAGCCATG
CCCCCACCACCTATGCCTCCTGGGGCTGCAGGACATGGCCCCCCATCGGCAGGAACCCCAGGGGCAGGACATCCTGGTCA
TGGACACTCACATCCTCACCCGTTCCCACCGGGTGGGATGCCCCATCCAGGGATGTCACAGATGCAGCTGGCACACCATG
GCCCTCATGGCTTAGGACATCCCCACGCTGGACCCCCAGGCTCTGGGGGGCAGCCACCGCCCCGACCACCACCTGGAATG
CCTCATCCTGGACCTCCTCCAATGGGCATGCCCCCCCGAGGGCCTCCATTCGGATCTCCCATGGGTCACCCAGGTCCTAT
GCCTCCGCATGGTATGCGTGGACCTCCTCCACTGATGCCCCCCCATGGATACACTGGCCCTCCACGACCCCCACCCTATG
GCTACCAGAGGGGGCCTCTCCCTCCACCCAGACCCACTCCCCGGCCACCAGTTCCCCCTCGAGGCCCACTTCGAGGCCCT
CTCCCTCAGTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 17 .20 RPM
SRP007412_cerebellum 4 .01 RPM
SRP007412_heart 2 .92 RPM
SRP007412_kidney 14 .72 RPM
SRP007412_liver 5 .97 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000012495 ortholog_one2one 2 retrogenes
retro_btau_1385, retro_btau_592,
Canis familiaris ENSCAFG00000011617 ortholog_one2one 3 retrogenes
retro_cfam_585, retro_cfam_711, retro_cfam_729,
Callithrix jacchus ENSCJAG00000000793 ortholog_one2one 3 retrogenes
retro_cjac_1297, retro_cjac_1909, retro_cjac_638,
Cavia porcellus ENSCPOG00000008267 ortholog_one2one 1 retrogene
retro_cpor_234,
Echinops telfairi ENSETEG00000008963 ortholog_one2one 1 retrogene
retro_etel_1310,
Homo sapiens ENSG00000143368 ortholog_one2one 1 retrogene
retro_hsap_1356,
Gorilla gorilla ENSGGOG00000004761 ortholog_one2one 1 retrogene
retro_ggor_1056,
Macaca mulatta ENSMMUG00000007256 ortholog_one2one 1 retrogene
retro_mmul_2191,
Mustela putorius furo ENSMPUG00000005563 ortholog_one2one 2 retrogenes
retro_mputfur_1105, retro_mputfur_648,
Oryctolagus cuniculus ENSOCUG00000004614 ortholog_one2one 1 retrogene
retro_ocun_1239,
Pongo abelii ENSPPYG00000003894 within_species_paralog 1 retrogene
retro_pabe_1669,
Pan troglodytes ENSPTRG00000001243 ortholog_one2one 1 retrogene
retro_ptro_930,
Pteropus vampyrus ENSPVAG00000014171 ortholog_one2one 1 retrogene
retro_pvam_931,
Rattus norvegicus ENSRNOG00000021181 ortholog_one2one 1 retrogene
retro_rnor_2350,
Ictidomys tridecemlineatus ENSSTOG00000000684 ortholog_one2one 2 retrogenes
retro_itri_1153, retro_itri_487,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1124 87.56 77.78
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSPPYG00000000912 retrocopies