Parental gene:

ENSOCUG00000003342

Aliases:None
Description:None
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:1:101995865..102006231(-)


>ENSOCUG00000003342
ATGGGGGCAGCGGCCGCGGAAGCGGATCGCACTCTGTTTGTGGGCAACCTTGAAACTAAAGTGACAGAGGAGCTCCTGTT
TGAGCTTTTCCACCAGGCTGGGCCAGTAATAAAGGTGAAAATTCCAAAAGATAAGGATGGTAAACCAAAGCAGTTCGCAT
TTGTAAATTTCAAACATGAGGTGTCTGTTCCTTATGCAATGAATCTACTTAATGGCATCAAACTTTTTGGAAGGCCCATC
AAAATTCAATTTAGATCAGGAAGTAGTCATGCCTCACAGGATGTCAGTTTGTCATATCCCCAGCATCATGTTGGAAATTC
AAGCCCTACCTCCACTTCTCCTAGCAGCAGATACGAAAGGACAGTGGATAATGTGGCTCCATCAGCACAGATGATCCAGA
GGTCTTTCTCATCTCCAGAAAATTATCAGAGACAAGCAGTGATGAACAGTGTTTTGAGACAGATGTCATATGGTGGGAAA
TTTGGTTCTCCACATGTGGATCAGTCAGGATTCTCGCCATCAGTTCAGTCCCATAATCATGCTTTTATCCCGTCGTCAAG
CTCCCAGTGGCGCCAGGATACCCCGTCGTCGCAGCGTAAAGGCAGGCAGAATTCTCACCCCTACCTGGCAGACAGACATT
ACAGCCGTGAGCAGCGGCACTCTGATCACGGGTCTGACCGCCACTACAGAGGCAGCCGCGATGATTTCTTCTATGAAGAC
AGGAACCATGATGGCTGGAGCCATGACTATGATAACAGGAGAGACAGTAGTAGAGATGGAAAATGGCGTTCGTCTCGGCA
CTGA

Library Parental gene expression (RPM)
SRP017611_brain 16 .56 RPM
SRP017611_kidney 27 .87 RPM
SRP017611_liver 10 .94 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000013514 ortholog_one2one 1 retrogene
retro_cfam_1021,
Choloepus hoffmanni ENSCHOG00000012747 ortholog_one2one 1 retrogene
retro_chof_570,
Homo sapiens ENSG00000076053 ortholog_one2many 1 retrogene
retro_hsap_2283,
Gorilla gorilla ENSGGOG00000009941 ortholog_one2one 1 retrogene
retro_ggor_1696,
Loxodonta africana ENSLAFG00000012444 ortholog_one2one 1 retrogene
retro_lafr_892,
Myotis lucifugus ENSMLUG00000023234 ortholog_one2one 2 retrogenes
retro_mluc_1555, retro_mluc_587,
Monodelphis domestica ENSMODG00000013918 ortholog_one2one 1 retrogene
retro_mdom_535,
Mus musculus ENSMUSG00000042396 ortholog_one2one 1 retrogene
retro_mmus_2436,
Nomascus leucogenys ENSNLEG00000007323 ortholog_one2one 1 retrogene
retro_nleu_409,
Oryctolagus cuniculus ENSOCUG00000004614 within_species_paralog 1 retrogene
retro_ocun_1239,
Otolemur garnettii ENSOGAG00000016857 ortholog_one2one 1 retrogene
retro_ogar_3103,
Pongo abelii ENSPPYG00000003894 ortholog_one2one 1 retrogene
retro_pabe_1669,
Pan troglodytes ENSPTRG00000004305 ortholog_one2one 1 retrogene
retro_ptro_1617,
Ictidomys tridecemlineatus ENSSTOG00000012459 ortholog_one2one 1 retrogene
retro_itri_889,
Tursiops truncatus ENSTTRG00000001515 ortholog_one2one 3 retrogenes
retro_ttru_1316, retro_ttru_1441, retro_ttru_478,
Vicugna pacos ENSVPAG00000006300 ortholog_one2one 1 retrogene
retro_vpac_311,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_924 76.19 54.68
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Download FASTA sequences of all ENSOCUG00000003342 retrocopies