Parental gene:

Rpl34, ENSMUSG00000062006

Aliases:Rpl34, 1100001I22Rik
Description:ribosomal protein L34 [Source:MGI Symbol;Acc:MGI:1915686]
Organism:Mouse (Mus musculus)
Coordinates:3:130726830..130730398(-)


>ENSMUSG00000062006
ATGGTCCAGCGTTTGACATACCGCCGTAGGCTTTCCTACAACACAGCCTCTAACAAAACTAGGCTGTCTCGAACCCCTGG
CAACAGGATTGTTTACCTCTACACCAAGAAGGTTGGGAAAGCACCTAAATCTGCATGTGGCGTGTGCCCAGGCAGACTTC
GAGGGGTTCGTGCTGTGCGGCCCAAAGTCCTTATGAGACTGTCTAAGACACAGAAGCACGTCAGCAGGGCCTATGGCGGC
TCCATGTGTGCCAAGTGTGTCCGTGACAGGATCAAGCGGGCTTTCCTTATTGAGGAGCAGAAAATCGTTGTGAAAGTCTT
GAAGGCACAAGCACAGAGTCAGAAAGCAAAATAG

Library Parental gene expression (RPM)
SRP007412_brain 41 .14 RPM
SRP007412_cerebellum 24 .40 RPM
SRP007412_heart 40 .38 RPM
SRP007412_kidney 42 .08 RPM
SRP007412_liver 45 .41 RPM
SRP007412_testis 39 .75 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000009074 possible_ortholog 10 retrogenes
retro_chof_1313, retro_chof_1474, retro_chof_184, retro_chof_2249, retro_chof_2258, retro_chof_2260, retro_chof_2291, retro_chof_2411, retro_chof_281, retro_chof_324,
Callithrix jacchus ENSCJAG00000015993 ortholog_one2one 4 retrogenes
retro_cjac_130, retro_cjac_293, retro_cjac_83, retro_cjac_99,
Dasypus novemcinctus ENSDNOG00000011179 ortholog_one2many 26 retrogenes
retro_dnov_1172, retro_dnov_1775, retro_dnov_2020, retro_dnov_2025, retro_dnov_2079, retro_dnov_2127, retro_dnov_2137, retro_dnov_2275, retro_dnov_2385, retro_dnov_2501, retro_dnov_252, retro_dnov_262, retro_dnov_2627, retro_dnov_2651, retro_dnov_325, retro_dnov_339, retro_dnov_430, retro_dnov_553, retro_dnov_565, retro_dnov_59, retro_dnov_606, retro_dnov_635, retro_dnov_658, retro_dnov_862, retro_dnov_88, retro_dnov_978,
Echinops telfairi ENSETEG00000003715 possible_ortholog 53 retrogenes
retro_etel_106, retro_etel_107, retro_etel_1125, retro_etel_1140, retro_etel_1182, retro_etel_1187, retro_etel_1232, retro_etel_124, retro_etel_1303, retro_etel_1324, retro_etel_145, retro_etel_1483, retro_etel_1515, retro_etel_1545, retro_etel_1547, retro_etel_158, retro_etel_170, retro_etel_1745, retro_etel_1767, retro_etel_179, retro_etel_1795, retro_etel_1890, retro_etel_1967, retro_etel_1973, retro_etel_2066, retro_etel_2094, retro_etel_217, retro_etel_2191, retro_etel_273, retro_etel_274, retro_etel_299, retro_etel_327, retro_etel_344, retro_etel_362, retro_etel_380, retro_etel_388, retro_etel_416, retro_etel_418, retro_etel_429, retro_etel_464, retro_etel_494, retro_etel_533, retro_etel_726, retro_etel_74, retro_etel_756, retro_etel_759, retro_etel_774, retro_etel_863, retro_etel_870, retro_etel_914, retro_etel_927, retro_etel_938, retro_etel_974,
Felis catus ENSFCAG00000015502 ortholog_one2one 16 retrogenes
retro_fcat_1240, retro_fcat_1334, retro_fcat_1401, retro_fcat_1453, retro_fcat_1492, retro_fcat_1508, retro_fcat_1619, retro_fcat_2010, retro_fcat_368, retro_fcat_434, retro_fcat_518, retro_fcat_544, retro_fcat_640, retro_fcat_941, retro_fcat_953, retro_fcat_956,
Gadus morhua ENSGMOG00000009982 ortholog_one2many 1 retrogene
retro_gmor_31,
Loxodonta africana ENSLAFG00000032615 ortholog_one2many 6 retrogenes
retro_lafr_1039, retro_lafr_1232, retro_lafr_182, retro_lafr_298, retro_lafr_306, retro_lafr_733,
Macropus eugenii ENSMEUG00000009361 ortholog_one2many 3 retrogenes
retro_meug_1012, retro_meug_1754, retro_meug_1775,
Myotis lucifugus ENSMLUG00000000464 ortholog_one2one 4 retrogenes
retro_mluc_125, retro_mluc_1372, retro_mluc_1427, retro_mluc_1847,
Monodelphis domestica ENSMODG00000020601 ortholog_one2many 3 retrogenes
retro_mdom_1690, retro_mdom_774, retro_mdom_836,
Nomascus leucogenys ENSNLEG00000012934 ortholog_one2one 20 retrogenes
retro_nleu_1219, retro_nleu_1322, retro_nleu_1495, retro_nleu_150, retro_nleu_1617, retro_nleu_1703, retro_nleu_1839, retro_nleu_1915, retro_nleu_2101, retro_nleu_2260, retro_nleu_2268, retro_nleu_2575, retro_nleu_263, retro_nleu_2911, retro_nleu_2916, retro_nleu_2966, retro_nleu_3073, retro_nleu_38, retro_nleu_553, retro_nleu_861,
Ornithorhynchus anatinus ENSOANG00000007856 possible_ortholog 1 retrogene
retro_oana_92,
Ochotona princeps ENSOPRG00000001780 possible_ortholog 11 retrogenes
retro_opri_1013, retro_opri_142, retro_opri_303, retro_opri_311, retro_opri_344, retro_opri_365, retro_opri_39, retro_opri_610, retro_opri_771, retro_opri_907, retro_opri_933,
Pelodiscus sinensis ENSPSIG00000003295 ortholog_one2many 1 retrogene
retro_psin_60,
Rattus norvegicus ENSRNOG00000016387 ortholog_one2one 36 retrogenes
retro_rnor_1031, retro_rnor_1083, retro_rnor_1101, retro_rnor_1172, retro_rnor_1376, retro_rnor_1550, retro_rnor_1575, retro_rnor_1630, retro_rnor_1694, retro_rnor_1695, retro_rnor_1696, retro_rnor_1775, retro_rnor_1803, retro_rnor_1844, retro_rnor_1857, retro_rnor_2029, retro_rnor_2090, retro_rnor_2095, retro_rnor_2139, retro_rnor_2230, retro_rnor_2565, retro_rnor_2578, retro_rnor_2597, retro_rnor_2621, retro_rnor_2651, retro_rnor_2794, retro_rnor_282, retro_rnor_367, retro_rnor_500, retro_rnor_575, retro_rnor_605, retro_rnor_617, retro_rnor_672, retro_rnor_848, retro_rnor_866, retro_rnor_869,
Sarcophilus harrisii ENSSHAG00000001357 ortholog_many2many 1 retrogene
retro_shar_799,
Sarcophilus harrisii ENSSHAG00000002052 ortholog_many2many 3 retrogenes
retro_shar_131, retro_shar_324, retro_shar_419,
Tupaia belangeri ENSTBEG00000003574 ortholog_one2many 24 retrogenes
retro_tbel_1109, retro_tbel_1298, retro_tbel_1337, retro_tbel_1532, retro_tbel_1781, retro_tbel_1857, retro_tbel_1941, retro_tbel_213, retro_tbel_2162, retro_tbel_2165, retro_tbel_2372, retro_tbel_2391, retro_tbel_2601, retro_tbel_279, retro_tbel_335, retro_tbel_3606, retro_tbel_3984, retro_tbel_4059, retro_tbel_4398, retro_tbel_657, retro_tbel_74, retro_tbel_901, retro_tbel_974, retro_tbel_983,
Tursiops truncatus ENSTTRG00000003443 ortholog_one2one 6 retrogenes
retro_ttru_1667, retro_ttru_1831, retro_ttru_355, retro_ttru_710, retro_ttru_717, retro_ttru_821,
Xenopus tropicalis ENSXETG00000021095 ortholog_many2many 1 retrogene
retro_xtro_5,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_215 82.20 100.00
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2. retro_mmus_467 53.75 66.67
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3. retro_mmus_609 84.03 100.00
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4. retro_mmus_640 60.44 77.78
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5. retro_mmus_817 56.52 98.29
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6. retro_mmus_823 52.11 59.83
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7. retro_mmus_882 65.33 62.39
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8. retro_mmus_1064 94.87 100.00
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9. retro_mmus_1283 85.92 60.68
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10. retro_mmus_1513 54.74 78.63
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11. retro_mmus_1603 87.36 74.36
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12. retro_mmus_1658 100.00 100.00
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13. retro_mmus_2115 67.35 81.20
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14. retro_mmus_2116 65.62 81.20
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15. retro_mmus_2154 76.85 90.60
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16. retro_mmus_2266 52.05 58.97
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17. retro_mmus_2290 61.84 64.96
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18. retro_mmus_2476 99.15 100.00
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19. retro_mmus_2595 97.44 100.00
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20. retro_mmus_2695 63.87 99.15
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21. retro_mmus_2748 100.00 100.00
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22. retro_mmus_2903 73.21 92.31
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23. retro_mmus_2960 77.53 75.21
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24. retro_mmus_3041 68.33 99.15
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25. retro_mmus_3381 66.39 100.00
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26. retro_mmus_3524 90.54 63.25
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Download FASTA sequences of all ENSMUSG00000062006 retrocopies