Parental gene:

RPS16, ENSG00000105193

Aliases:RPS16, S16
Description:ribosomal protein S16 [Source:HGNC Symbol;Acc:10396]
Organism:Human (Homo sapiens)
Coordinates:19:39923846..39926588(-)


>ENSG00000105193
ATGCCGTCCAAGGGCCCGCTGCAGTCTGTGCAGGTCTTCGGACGCAAGAAGACAGCGACAGCTGTGGCGCACTGCAAACG
CGGCAATGGTCTCATCAAGGTGAACGGGCGGCCCCTGGAGATGATTGAGCCGCGCACGCTACAGTACAAGCTGCTGGAGC
CAGTTCTGCTTCTCGGCAAGGAGCGATTTGCTGGTGTAGACATCCGTGTCCGTGTAAAGGGTGGTGGTCACGTGGCCCAG
ATTTATGCTATCCGTCAGTCCATCTCCAAAGCCCTGGTGGCCTATTACCAGAAATATGTGGATGAGGCTTCCAAGAAGGA
GATCAAAGACATCCTCATCCAGTATGACCGGACCCTGCTGGTAGCTGACCCTCGTCGCTGCGAGTCCAAAAAGTTTGGAG
GCCCTGGTGCCCGCGCTCGCTACCAGAAATCCTACCGATAA

Library Parental gene expression (RPM)
bodymap2_adipose 504 .20 RPM
bodymap2_adrenal 692 .44 RPM
bodymap2_brain 113 .43 RPM
bodymap2_breast 269 .05 RPM
bodymap2_colon 714 .54 RPM
bodymap2_heart 119 .68 RPM
bodymap2_kidney 207 .65 RPM
bodymap2_liver 187 .09 RPM
bodymap2_lung 566 .30 RPM
bodymap2_lymph_node 633 .71 RPM
bodymap2_ovary 742 .68 RPM
bodymap2_prostate 628 .70 RPM
bodymap2_skeletal_muscle 451 .53 RPM
bodymap2_testis 380 .17 RPM
bodymap2_thyroid 346 .61 RPM
bodymap2_white_blood_cells 658 .62 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000014176 ortholog_one2one 1 retrogene
retro_acar_194,
Ailuropoda melanoleuca ENSAMEG00000008470 ortholog_one2one 8 retrogenes
retro_amel_1105, retro_amel_1143, retro_amel_1463, retro_amel_1790, retro_amel_1865, retro_amel_306, retro_amel_668, retro_amel_840,
Bos taurus ENSBTAG00000021093 ortholog_one2many 3 retrogenes
retro_btau_1509, retro_btau_167, retro_btau_441,
Callithrix jacchus ENSCJAG00000014170 ortholog_one2one 6 retrogenes
retro_cjac_2641, retro_cjac_2737, retro_cjac_3019, retro_cjac_885, retro_cjac_905, retro_cjac_949,
Cavia porcellus ENSCPOG00000011359 ortholog_one2one 3 retrogenes
retro_cpor_1266, retro_cpor_1408, retro_cpor_1515,
Felis catus ENSFCAG00000010743 possible_ortholog 4 retrogenes
retro_fcat_1258, retro_fcat_1709, retro_fcat_1806, retro_fcat_1976,
Gorilla gorilla ENSGGOG00000014414 possible_ortholog 10 retrogenes
retro_ggor_110, retro_ggor_1250, retro_ggor_1344, retro_ggor_1664, retro_ggor_1766, retro_ggor_193, retro_ggor_2423, retro_ggor_2819, retro_ggor_652, retro_ggor_667,
Loxodonta africana ENSLAFG00000001541 ortholog_one2one 1 retrogene
retro_lafr_1191,
Myotis lucifugus ENSMLUG00000029089 ortholog_one2one 5 retrogenes
retro_mluc_1906, retro_mluc_2096, retro_mluc_2174, retro_mluc_2529, retro_mluc_481,
Macaca mulatta ENSMMUG00000019370 ortholog_one2many 8 retrogenes
retro_mmul_1018, retro_mmul_1080, retro_mmul_1175, retro_mmul_1219, retro_mmul_1403, retro_mmul_20, retro_mmul_767, retro_mmul_862,
Monodelphis domestica ENSMODG00000013545 ortholog_one2one 4 retrogenes
retro_mdom_1668, retro_mdom_1823, retro_mdom_815, retro_mdom_856,
Mustela putorius furo ENSMPUG00000017722 ortholog_one2one 5 retrogenes
retro_mputfur_283, retro_mputfur_322, retro_mputfur_447, retro_mputfur_701, retro_mputfur_985,
Mus musculus ENSMUSG00000037563 ortholog_one2one 11 retrogenes
retro_mmus_1780, retro_mmus_2058, retro_mmus_2125, retro_mmus_2697, retro_mmus_2727, retro_mmus_3091, retro_mmus_3173, retro_mmus_3198, retro_mmus_3202, retro_mmus_700, retro_mmus_771,
Nomascus leucogenys ENSNLEG00000014388 possible_ortholog 3 retrogenes
retro_nleu_1266, retro_nleu_248, retro_nleu_46,
Otolemur garnettii ENSOGAG00000004497 possible_ortholog 4 retrogenes
retro_ogar_1229, retro_ogar_1309, retro_ogar_1313, retro_ogar_98,
Oreochromis niloticus ENSONIG00000000006 ortholog_one2one 1 retrogene
retro_onil_52,
Pelodiscus sinensis ENSPSIG00000016930 ortholog_one2one 1 retrogene
retro_psin_55,
Rattus norvegicus ENSRNOG00000019578 ortholog_one2one 3 retrogenes
retro_rnor_10, retro_rnor_1823, retro_rnor_302,
Sus scrofa ENSSSCG00000010712 possible_ortholog 1 retrogene
retro_sscr_731,
Sus scrofa ENSSSCG00000020817 ortholog_one2one 3 retrogenes
retro_sscr_478, retro_sscr_5, retro_sscr_723,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_118 92.47 100.00
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2. retro_hsap_787 53.76 71.32
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3. retro_hsap_813 73.33 58.14
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4. retro_hsap_1658 89.93 95.21
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5. retro_hsap_1736 70.00 68.49
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6. retro_hsap_1977 93.84 100.00
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7. retro_hsap_2064 70.11 55.92
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8. retro_hsap_2230 75.51 100.00
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9. retro_hsap_2327 65.04 82.19
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10. retro_hsap_3593 65.09 72.60
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11. retro_hsap_4209 71.00 67.12
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Download FASTA sequences of all ENSG00000105193 retrocopies