Parental gene:

RPS11, ENSFCAG00000009196

Aliases:None
Description:ribosomal protein S11 [Source:HGNC Symbol;Acc:10384]
Organism:Cat (Felis catus)
Coordinates:E2:7982813..7985178(-)


>ENSFCAG00000009196
ATGGCGGACATTCAGACTGAGCGTGCCTACCAAAAGCAGCCAACCATCTTTCAAAATAAGAAGAGGGTCCTGCTTGGAGA
AACTGGCAAGGAGAAACTCCCACGATACTACAAAAACATCGGTTTGGGCTTCAAGACGCCCAAGGAGGCCATTGAGGGTA
CCTATATTGACAAGAAATGCCCCTTTACTGGTAACGTCTCCATCCGAGGGCGGATTCTATCTGGTGTGGTGACCAAGATG
AAGATGCAGAGGACCATTGTCATCCGCCGGGACTACCTGCATTATATCCGAAAGTACAACCGCTTTGAGAAACGCCACAA
GAACATGTCCGTGCACCTGTCCCCCTGCTTCAGGGATGTCCAGATCGGCGACATTGTCACAGTGGGTGAGTGCCGGCCCT
TGAGCAAGACTGTGCGCTTCAACGTGCTCAAAGTCACAAAGGCTGCTGGCACCAAAAAGCAATTCCAGAAGTTCTGA

Library Parental gene expression (RPM)
SRP017611_brain 123 .04 RPM
SRP017611_kidney 501 .27 RPM
SRP017611_liver 210 .87 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000003631 possible_ortholog 9 retrogenes
retro_cfam_126, retro_cfam_1333, retro_cfam_1572, retro_cfam_1656, retro_cfam_1669, retro_cfam_1900, retro_cfam_1955, retro_cfam_2121, retro_cfam_248,
Danio rerio ENSDARG00000053058 ortholog_many2many 1 retrogene
retro_drer_15,
Dasypus novemcinctus ENSDNOG00000016107 possible_ortholog 9 retrogenes
retro_dnov_1055, retro_dnov_1102, retro_dnov_1629, retro_dnov_1729, retro_dnov_188, retro_dnov_2520, retro_dnov_586, retro_dnov_68, retro_dnov_754,
Dipodomys ordii ENSDORG00000012195 ortholog_one2one 1 retrogene
retro_dord_635,
Equus caballus ENSECAG00000000370 ortholog_one2many 1 retrogene
retro_ecab_868,
Gorilla gorilla ENSGGOG00000002936 possible_ortholog 6 retrogenes
retro_ggor_1525, retro_ggor_2843, retro_ggor_2900, retro_ggor_292, retro_ggor_805, retro_ggor_842,
Macropus eugenii ENSMEUG00000008649 possible_ortholog 2 retrogenes
retro_meug_1176, retro_meug_1640,
Microcebus murinus ENSMICG00000002542 ortholog_one2one 8 retrogenes
retro_mmur_1278, retro_mmur_1317, retro_mmur_186, retro_mmur_295, retro_mmur_430, retro_mmur_452, retro_mmur_812, retro_mmur_820,
Myotis lucifugus ENSMLUG00000030475 possible_ortholog 1 retrogene
retro_mluc_539,
Macaca mulatta ENSMMUG00000007549 possible_ortholog 6 retrogenes
retro_mmul_1147, retro_mmul_1856, retro_mmul_2464, retro_mmul_413, retro_mmul_634, retro_mmul_813,
Monodelphis domestica ENSMODG00000013434 ortholog_one2many 7 retrogenes
retro_mdom_1185, retro_mdom_1284, retro_mdom_1421, retro_mdom_1950, retro_mdom_636, retro_mdom_922, retro_mdom_978,
Mus musculus ENSMUSG00000003429 ortholog_one2one 16 retrogenes
retro_mmus_1738, retro_mmus_2230, retro_mmus_2255, retro_mmus_2322, retro_mmus_2486, retro_mmus_2854, retro_mmus_3048, retro_mmus_3051, retro_mmus_3060, retro_mmus_3342, retro_mmus_398, retro_mmus_404, retro_mmus_714, retro_mmus_754, retro_mmus_842, retro_mmus_860,
Otolemur garnettii ENSOGAG00000004627 possible_ortholog 7 retrogenes
retro_ogar_1290, retro_ogar_1813, retro_ogar_1910, retro_ogar_2037, retro_ogar_2573, retro_ogar_2640, retro_ogar_840,
Pelodiscus sinensis ENSPSIG00000011089 possible_ortholog 1 retrogene
retro_psin_35,
Pan troglodytes ENSPTRG00000011299 possible_ortholog 1 retrogene
retro_ptro_88,
Rattus norvegicus ENSRNOG00000020595 possible_ortholog 18 retrogenes
retro_rnor_1132, retro_rnor_1159, retro_rnor_1261, retro_rnor_1299, retro_rnor_1363, retro_rnor_1414, retro_rnor_1435, retro_rnor_1451, retro_rnor_1635, retro_rnor_1790, retro_rnor_2000, retro_rnor_2647, retro_rnor_385, retro_rnor_394, retro_rnor_538, retro_rnor_737, retro_rnor_835, retro_rnor_989,
Sarcophilus harrisii ENSSHAG00000004991 possible_ortholog 1 retrogene
retro_shar_649,
Sus scrofa ENSSSCG00000003165 possible_ortholog 2 retrogenes
retro_sscr_432, retro_sscr_887,
Ictidomys tridecemlineatus ENSSTOG00000023443 possible_ortholog 2 retrogenes
retro_itri_1033, retro_itri_805,
Tupaia belangeri ENSTBEG00000016677 possible_ortholog 16 retrogenes
retro_tbel_125, retro_tbel_1361, retro_tbel_1753, retro_tbel_2071, retro_tbel_2207, retro_tbel_2808, retro_tbel_2947, retro_tbel_319, retro_tbel_3401, retro_tbel_3571, retro_tbel_3600, retro_tbel_3742, retro_tbel_449, retro_tbel_604, retro_tbel_801, retro_tbel_836,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_197 74.68 100.00
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2. retro_fcat_273 70.00 86.71
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3. retro_fcat_507 70.51 98.10
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4. retro_fcat_792 59.52 51.90
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5. retro_fcat_854 70.89 100.00
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6. retro_fcat_995 88.27 100.00
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7. retro_fcat_1362 73.91 72.78
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8. retro_fcat_1491 77.99 99.37
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9. retro_fcat_1535 63.19 100.00
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10. retro_fcat_1564 67.23 75.32
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11. retro_fcat_1719 69.34 86.71
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12. retro_fcat_1945 71.88 100.00
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13. retro_fcat_1991 70.59 63.92
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Download FASTA sequences of all ENSFCAG00000009196 retrocopies