Parental gene:

ENSFCAG00000003611

Aliases:None
Description:None
Organism:Cat (Felis catus)
Coordinates:E2:3708700..3710684(-)


>ENSFCAG00000003611
CCCGCTCCAGGACTCACCGCCTTCCTCAAGGATGTCTGGGCCAAGGAGCCGGTGCTGGTCGCGTCCTTCACCATCGCGGG
CCTCGCTGTAATTCTGCCCACCATCAGCCCCTTCACCAAATATGCCACCATGATCAACCAGGCCACGCCCTACAACTATC
CAGTGCCCCTCCGAGATGATGGGAACATGCCTGACGTGCCCAGCCACCCCCAGGACCCTGAGGGTCCAAGCTTGGAGTGG
CTGAAGAAACTGTGA

Library Parental gene expression (RPM)
SRP017611_brain 9 .64 RPM
SRP017611_kidney 23 .39 RPM
SRP017611_liver 10 .51 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000007754 ortholog_many2many 2 retrogenes
retro_btau_207, retro_btau_986,
Canis familiaris ENSCAFG00000002703 ortholog_many2many 4 retrogenes
retro_cfam_1103, retro_cfam_12, retro_cfam_1274, retro_cfam_695,
Callithrix jacchus ENSCJAG00000018518 ortholog_many2many 5 retrogenes
retro_cjac_188, retro_cjac_2215, retro_cjac_2526, retro_cjac_382, retro_cjac_92,
Cavia porcellus ENSCPOG00000021937 ortholog_one2many 1 retrogene
retro_cpor_991,
Equus caballus ENSECAG00000015897 ortholog_one2many 3 retrogenes
retro_ecab_253, retro_ecab_598, retro_ecab_834,
Gorilla gorilla ENSGGOG00000023650 ortholog_many2many 2 retrogenes
retro_ggor_100, retro_ggor_1166,
Loxodonta africana ENSLAFG00000018014 ortholog_one2many 2 retrogenes
retro_lafr_225, retro_lafr_459,
Macropus eugenii ENSMEUG00000002939 ortholog_one2many 2 retrogenes
retro_meug_408, retro_meug_688,
Monodelphis domestica ENSMODG00000004118 ortholog_one2many 1 retrogene
retro_mdom_404,
Mustela putorius furo ENSMPUG00000010317 ortholog_many2many 3 retrogenes
retro_mputfur_1070, retro_mputfur_124, retro_mputfur_771,
Mus musculus ENSMUSG00000035674 ortholog_one2many 3 retrogenes
retro_mmus_1843, retro_mmus_3244, retro_mmus_486,
Otolemur garnettii ENSOGAG00000006931 ortholog_one2many 10 retrogenes
retro_ogar_1056, retro_ogar_1244, retro_ogar_1260, retro_ogar_1990, retro_ogar_2128, retro_ogar_2732, retro_ogar_2970, retro_ogar_3105, retro_ogar_3427, retro_ogar_729,
Pan troglodytes ENSPTRG00000028890 ortholog_one2many 5 retrogenes
retro_ptro_1032, retro_ptro_1093, retro_ptro_1336, retro_ptro_255, retro_ptro_842,
Pteropus vampyrus ENSPVAG00000015560 ortholog_one2many 5 retrogenes
retro_pvam_1197, retro_pvam_1261, retro_pvam_479, retro_pvam_512, retro_pvam_979,
Rattus norvegicus ENSRNOG00000014224 ortholog_many2many 1 retrogene
retro_rnor_104,
Sarcophilus harrisii ENSSHAG00000009016 ortholog_one2many 2 retrogenes
retro_shar_167, retro_shar_207,
Sus scrofa ENSSSCG00000003261 ortholog_many2many 3 retrogenes
retro_sscr_45, retro_sscr_628, retro_sscr_97,
Ictidomys tridecemlineatus ENSSTOG00000025377 ortholog_one2many 2 retrogenes
retro_itri_1280, retro_itri_756,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_122 80.00 95.24
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2. retro_fcat_442 72.15 94.05
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3. retro_fcat_448 58.21 78.57
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4. retro_fcat_839 72.15 91.67
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5. retro_fcat_916 68.12 79.76
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6. retro_fcat_1501 61.64 84.52
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Download FASTA sequences of all ENSFCAG00000003611 retrocopies