Parental gene:

CSA.9185, ENSCSAVG00000006503

Aliases:None
Description:None
Organism:Pacific transparent sea squirt (Ciona savignyi)
Coordinates:reftig_15:1033225..1041709(-)


>ENSCSAVG00000006503
ATGTCAATTCTTACACGAATATCAGAAATTGAGGCCGAGATGGCTCGGACTCAGAAAAACAAAGCGACAGCGGGTCACTT
GGGTATGTTGAAGGCGCGACTGGCAAAACTGAAGAGGGAACTGATCACCCCGAAGGGAGGTGGTGGGGGTGGACCTGGTG
AAGGTTTTGATGTTGCTAAAACTGGTGACGCTCGAATTGGATTTGTCGGTTTTCCATCTGTAGGCAAATCCACCCTGCTA
AGCAATATAGCTGGGGTCTACAGTGAAGTTGCGTCATATGAGTTTACAACCCTAACTACTGTGCCGGGGGTTATCAAGTA
TAAAGGTGCAAAGATCCAGCTGCTTGATCTTCCTGGTATCATTGAAGGAGCGAAGGATGGAAAGGGAAGAGGAAAACAAG
TGATTGCAGTGGCTCGGACTTGCGGTCTTATTTTCATCGTCCTCGACGTGTTGAAACCCCTCGGGGACAAGAGGCTCATC
GAGAAGGAGTTGGAAGGGTTTGGGATCCGGTTGAATAAGAAACCTCCGAACATCCATTATAAAGTGAAGGAGAAAGGAGG
AATCAACTTCCAAGCGATGGTACCACAATCAGAACTTGATGGAGAACTAGCGAAAAAGATATTATCTGAGTATCGAATCC
ATAATGCTGATATCATACTGAAGGAGGATTGCTCTGCAGATGACCTGATTGATATGGTGGAAGGGAACAGGGTTTACATC
CCTTGTATCTACCTTCTTAACAAGATTGATCAGATTTCCATCGAAGAGTTGGACATCATATACAAAATCCCGCACTGCGT
ACCAATCTCCGCCCACCACAAGTGGAACTTCGATGACCTGCTTGAGAAAATGTGGGAATACCTGAAGCTCATACGAATAT
ACACCAAACCGAAGGGACAACTACCAGATTACGAAGCACCAGTGGTACTCAGCTCTGAGAAAAGTTCAGTGGAAGATTTC
TGCAATAAAATTCATAGAACTTTGCTTAAACAATTTAAACATGCCTTGGTATGGGGTTCCTCAGTGAAATACAACCCACA
AAGTGTTGGTAAGGAACATGTACTAATGGACGAAGATGTCGTGCAGATTGTAAAAAGGGTA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000007040 ortholog_one2one 1 retrogene
retro_amel_1448,
Canis familiaris ENSCAFG00000032601 ortholog_one2one 6 retrogenes
retro_cfam_1535, retro_cfam_1807, retro_cfam_382, retro_cfam_415, retro_cfam_453, retro_cfam_607,
Ciona intestinalis ENSCING00000003305 ortholog_one2one 1 retrogene
retro_cint_1,
Callithrix jacchus ENSCJAG00000011009 ortholog_one2many 4 retrogenes
retro_cjac_1104, retro_cjac_2246, retro_cjac_2606, retro_cjac_855,
Cavia porcellus ENSCPOG00000010791 ortholog_one2one 1 retrogene
retro_cpor_1401,
Dasypus novemcinctus ENSDNOG00000001312 ortholog_one2one 1 retrogene
retro_dnov_531,
Homo sapiens ENSG00000185721 ortholog_one2one 1 retrogene
retro_hsap_2231,
Gorilla gorilla ENSGGOG00000011185 ortholog_one2one 1 retrogene
retro_ggor_1665,
Myotis lucifugus ENSMLUG00000007033 ortholog_one2one 1 retrogene
retro_mluc_1447,
Macaca mulatta ENSMMUG00000019099 ortholog_one2one 1 retrogene
retro_mmul_999,
Mustela putorius furo ENSMPUG00000012810 ortholog_one2one 1 retrogene
retro_mputfur_339,
Mus musculus ENSMUSG00000020457 ortholog_one2one 1 retrogene
retro_mmus_2366,
Nomascus leucogenys ENSNLEG00000027001 ortholog_one2one 1 retrogene
retro_nleu_2627,
Pan troglodytes ENSPTRG00000014272 ortholog_one2one 1 retrogene
retro_ptro_1578,
Ictidomys tridecemlineatus ENSSTOG00000014187 ortholog_one2one 1 retrogene
retro_itri_460,
Tarsius syrichta ENSTSYG00000010160 ortholog_one2one 3 retrogenes
retro_tsyr_1374, retro_tsyr_1918, retro_tsyr_405,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_csav_10 55.04 99.73
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Download FASTA sequences of all ENSCSAVG00000006503 retrocopies