Parental gene:

OSTC, ENSCPOG00000024467

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_43:8162159..8170974(+)


>ENSCPOG00000024467
ATGGAGACTTTGTACCGCGTCCCGTTCCTGGTGCTCGAATGTCCCAACCTGAAGCTGAAGAAGCCGCCATGGGTGCACAT
GCCGTCCGCCATGACGGTGTACGCGCTGGTGGTGGTGTCCTACTTCCTCATCACTGGAGGAATAATTTACGATGTGATCG
TGGAGCCGCCGAGCGTTGGCTCCATGACTGACGAGCATGGGCACCAGAGGCCGGTAGCTTTCTTGGCCTACAGGGTGAAT
GGACAGTACATCATGGAAGGCCTGGCCTCCAGTTTCCTGTTCACCATGGGCGGGCTGGGCTTCATCATCCTGGACCGATC
CAACGCGCCGAATATTCCAAAGCTCAACAGATTTCTCCTGCTGTTCATTGGCTTCGTCTGTGTGCTGTTGAGTTTCTTCA
TGGCCAGAGTGTTCATGAGGATGAAACTGCCGGGTTACCTGATGGGTTAG

Library Parental gene expression (RPM)
SRP017611_brain 8 .97 RPM
SRP017611_kidney 32 .87 RPM
SRP017611_liver 33 .25 RPM
SRP040447_lung 31 .05 RPM
SRP040447_skeletal_muscle 15 .12 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001753 ortholog_one2one 2 retrogenes
retro_amel_1110, retro_amel_165,
Canis familiaris ENSCAFG00000011286 ortholog_one2one 12 retrogenes
retro_cfam_1129, retro_cfam_1206, retro_cfam_1459, retro_cfam_1462, retro_cfam_1575, retro_cfam_1851, retro_cfam_1910, retro_cfam_1948, retro_cfam_2003, retro_cfam_263, retro_cfam_296, retro_cfam_814,
Callithrix jacchus ENSCJAG00000016002 possible_ortholog 3 retrogenes
retro_cjac_121, retro_cjac_2981, retro_cjac_324,
Echinops telfairi ENSETEG00000003717 ortholog_one2one 4 retrogenes
retro_etel_1564, retro_etel_492, retro_etel_878, retro_etel_970,
Gorilla gorilla ENSGGOG00000026873 possible_ortholog 6 retrogenes
retro_ggor_1457, retro_ggor_2060, retro_ggor_215, retro_ggor_2427, retro_ggor_370, retro_ggor_385,
Monodelphis domestica ENSMODG00000020599 ortholog_one2one 1 retrogene
retro_mdom_428,
Mustela putorius furo ENSMPUG00000008869 ortholog_one2one 1 retrogene
retro_mputfur_1451,
Mus musculus ENSMUSG00000041084 ortholog_one2one 1 retrogene
retro_mmus_648,
Oryctolagus cuniculus ENSOCUG00000011056 possible_ortholog 2 retrogenes
retro_ocun_1318, retro_ocun_7,
Pteropus vampyrus ENSPVAG00000005915 ortholog_one2one 1 retrogene
retro_pvam_924,
Rattus norvegicus ENSRNOG00000023322 ortholog_one2one 1 retrogene
retro_rnor_2297,
Sus scrofa ENSSSCG00000009145 ortholog_one2one 1 retrogene
retro_sscr_503,
Ictidomys tridecemlineatus ENSSTOG00000021644 ortholog_one2one 6 retrogenes
retro_itri_1211, retro_itri_1386, retro_itri_15, retro_itri_1571, retro_itri_789, retro_itri_863,
Tarsius syrichta ENSTSYG00000000724 ortholog_one2one 2 retrogenes
retro_tsyr_1193, retro_tsyr_921,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_659 59.30 57.05
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Download FASTA sequences of all ENSCPOG00000024467 retrocopies